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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_01000.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 29388.8 Da PI: 5.6402 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 115 | 136 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F + ++L H+r+H Rsa1.0_01000.1_g00005.1 115 RCCLCGKEFQTMHSLFGHMRRH 136 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.8E-6 | 45 | 67 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0034 | 47 | 69 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.8E-6 | 109 | 136 | No hit | No description |
PROSITE profile | PS50157 | 9.806 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.091 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.1E-4 | 115 | 138 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKRTRDDDPS HFLHQSYDDD EEDEEEDSSS GGFQPPSPPP QQVKHFCVIC SKQFSSGKAY 60 GGHVRIHSSE YSSKGKRKKV KTKKRKICLV NKEKEKEKEK EIDLIRADVE REIIRCCLCG 120 KEFQTMHSLF GHMRRHPDRS WKGVRPPLPE KLNLSFLDDD DDDDESDDEG DEVMSGVTKD 180 VHDAARCLMM LKAGKRKATM ETANSEVRSF SYCNDEMDVD TKIKMEIEVN VNNPQDEAKK 240 RSLEIDLNQP CHDSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_01000.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436254.1 | 0.0 | PREDICTED: uncharacterized protein LOC108808638 | ||||
TrEMBL | A0A3P6B5I4 | 6e-99 | A0A3P6B5I4_BRACM; Uncharacterized protein | ||||
STRING | Bra012039.1-P | 6e-99 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11455 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 1e-60 | C2H2 family protein |