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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00979.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 296aa MW: 32179.6 Da PI: 8.7465 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.8 | 2.2e-32 | 69 | 124 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAas+Gg + DGCgEfmps geegt++al+CaAC+CHRnFHR+ev+ Rsa1.0_00979.1_g00003.1 69 TNVRYRECLKNHAASVGGSVHDGCGEFMPS-GEEGTIEALRCAACDCHRNFHRKEVD 124 689**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-29 | 70 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-26 | 70 | 124 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-30 | 72 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.276 | 73 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.33E-20 | 215 | 289 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-31 | 216 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-29 | 228 | 285 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDMRSHEMIE RRSDDNGNNG AGNISSIITN EDNCNGNNNN NNTRVSCNSQ TLDHHQSKSS 60 SNSAAAAKTN VRYRECLKNH AASVGGSVHD GCGEFMPSGE EGTIEALRCA ACDCHRNFHR 120 KEVDGVGSSA HHNRHHHHQY GGGGGGGGRR PPPSNMILNP LMLPPPPNYT PMHHHKYGMS 180 STGGGGGMVT PMSVAYGGGG GAESSSEDLN MYGQSSGGGS AGQMGFSKKR FRTKFTTEQK 240 ERMMEFAEKL GWRMNKQDEE ELKRFCNEIG VKRQVFKVWM HNNKNNAKKP STPGTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 227 | 287 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00979.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189493 | 1e-138 | AC189493.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084P16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459174.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 5-like isoform X1 | ||||
Swissprot | Q9FRL5 | 1e-121 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | A0A398ABA6 | 1e-136 | A0A398ABA6_BRACM; Uncharacterized protein | ||||
STRING | XP_006302600.1 | 1e-135 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7279 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 2e-48 | homeobox protein 33 |