|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_00968.1_g00004.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
MIKC_MADS |
Protein Properties |
Length: 248aa MW: 28133.3 Da PI: 9.2759 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00968.1_g00004.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.1 | 4.8e-28 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+f ++gkl+eys
Rsa1.0_00968.1_g00004.1 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFTPKGKLFEYS 58
8***********************************************8 PP
|
2 | K-box | 79.9 | 6.2e-27 | 88 | 173 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++++e +kL + i+ +q+++Rhl+Ge+++ Ls++eLq Le qL++sl++ Rs+Kn+l++e++ +lqkkekel+e +k+L kk++
Rsa1.0_00968.1_g00004.1 88 QGECSTECSKLLRMIDAMQTSLRHLKGEEVDALSIRELQGLEMQLDTSLRRTRSRKNQLMVESLAQLQKKEKELKELKKQLIKKVD 173
457899*****************************************************************************987 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 3.4E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.30E-38 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-29 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.6E-22 | 88 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.427 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFTP KGKLFEYSAG 60 SSMERILVRY ERCSYAGQDI PTPNLDTQGE CSTECSKLLR MIDAMQTSLR HLKGEEVDAL 120 SIRELQGLEM QLDTSLRRTR SRKNQLMVES LAQLQKKEKE LKELKKQLIK KVDQSEDIEP 180 QNLSQGLAST PPCETPHLLP EPMSPHPPLS IGDTSQRNEV GEEDAGIVVR SGNTTLPHWM 240 PRLTESRR
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AY141238 | 0.0 | AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds. |