PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00959.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 328aa    MW: 36056.3 Da    PI: 7.3128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00959.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-191867255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Rsa1.0_00959.1_g00010.1 18 RFLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 67
                             678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-301774No hitNo description
SMARTSM003803.6E-341881IPR001471AP2/ERF domain
PROSITE profilePS5103220.7451875IPR001471AP2/ERF domain
PfamPF008477.5E-121967IPR001471AP2/ERF domain
PRINTSPR003674.6E-81930IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-281975IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-211976IPR016177DNA-binding domain
PRINTSPR003674.6E-84157IPR001471AP2/ERF domain
PfamPF143685.7E-14188281IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
SuperFamilySSF476999.95E-13207283IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.103.0E-12208281No hitNo description
CDDcd000101.67E-17211273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNTTSSKSKK KQEEGGTRFL GVRRRPWGRY AAEIRDPTTK ERHWLGTFDT AEEAALAYDR  60
AARSMRGTRA RTNFVYSDMP HSSSVTSIIS PDDPPPPPPP AAAPPPRSND PVDYVMMFNQ  120
YSSTDSPMLQ PNHSDQVESS YMFGGSSSCY SNSSSELPPL PSDLSNSCYS QQQWSVDDYS  180
TATYFEVALI VVANLGMMHT RGQNVSCLNQ LAPCLNYLNG TKEVPQVCCN PLKSVIKNNP  240
ECLCRMISNR GSSRAERAGI DVNDAQMLPA RCGEHVNPIA CLTRSRGSTN SDRSSSVGNS  300
FSQSYWITTL AFAATLLSFI LQNESLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201674362ATERF1
3gcc_A2e-201674362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00959.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444836.11e-135PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9M6443e-84LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A078K3X40.0A0A078K3X4_BRANA; BnaCnng78540D protein
STRINGBra008793.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-55ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]