PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00942.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 266aa    MW: 29345.9 Da    PI: 4.7344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00942.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000567294123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C  C+k Fs   +L  H++ H
  Rsa1.0_00942.1_g00006.1 72 YTCRFCNKLFSVAQSLGGHMNAH 94
                             9*******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.36E-76998No hitNo description
Gene3DG3DSA:3.30.160.602.5E-46997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3467299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSSASSSVAR PEKCNDVNVT AGESQEMAME NNNSGLWSTR EVMSENPSLG SNAVPTIDGL  60
MQGYTSEPNK IYTCRFCNKL FSVAQSLGGH MNAHKTELQW ERKRKEMEKE FPLWVLRKYP  120
QGALSNDGNL GITSEPFKRI RTGLNPSFYS GVMDMNMNMT VGPRMAPTGV LSWNTYINGS  180
FSGGLAPVPS YNNYPPMLPR NVPPFPPHRT TNLPSYLYPQ ENVLNEEDVI LNLGNGNIVK  240
IDDDGEDAVD PPEEGTSKSW GADLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00942.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454057.11e-179PREDICTED: zinc finger protein STAMENLESS 1-like
TrEMBLA0A078JHP01e-138A0A078JHP0_BRANA; BnaCnng49940D protein
TrEMBLA0A3P6DWL41e-138A0A3P6DWL4_BRAOL; Uncharacterized protein
STRINGBo9g010580.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.11e-61C2H2 family protein