PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00942.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 404aa    MW: 42966.2 Da    PI: 4.0714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00942.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00012198220123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C+k F+++  L  H++ H
  Rsa1.0_00942.1_g00004.1 198 FTCPLCKKGFPTSQALGGHQNAH 220
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-6195226No hitNo description
Gene3DG3DSA:3.30.160.607.7E-4196225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468198225IPR007087Zinc finger, C2H2
PfamPF139121.8E-6198222IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSASSSSVAP PKTCNDEIIV AVDESMEKAT ESQVASSVSS SAPQPEKFND VTVAVEESPM  60
EKATENQAVS SACSSAPAPQ PEKSNDVTMA VEEANKEMVA TENQVVSSAG FIVAVEEATE  120
VVATTENQIV PYESSPAPPQ GTDVIVAVEE SREMETDNNN PGLGSALVVT ENPSPGSGAV  180
PTGNQITYLY PSRSNKIFTC PLCKKGFPTS QALGGHQNAH KQEREWEKKR KDMEQEYPGY  240
SFLNSKIDNP LLFFLGGYSS EALSNDNHLG IPLEAFKRRF TGNYPSSSNR FSDPNIAVVP  300
RVAPPTSFFP GNADGSSSGG LGGPTPLYSN YPPMIPRNAP PFPPPQTTNL PSGLYPQGNV  360
LNEVNFISEI GRGNIVEIDD DDDDGGDVEP EEGPSKSWGA DLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00942.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454056.10.0PREDICTED: uncharacterized protein LOC108825235
TrEMBLA0A078G4V71e-156A0A078G4V7_BRANA; BnaA09g03910D protein
STRINGBra036609.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.14e-66C2H2 family protein