PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00940.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 283aa    MW: 32238.3 Da    PI: 6.7986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00940.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31017e-3242152199
                              EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                              f+k ltpsdv+k++rlv+pk++ae++             +++ +++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L
  Rsa1.0_00940.1_g00011.1  42 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnttissnadTSSSDKGMLLSFEDESGKWWRFRYSYWNSSQSYVLTKGWSRYVKDKQL 127
                              99*************************999999988884445599***************************************** PP

                              -TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                              + gD+v F++++++ ++l+++++r+
  Rsa1.0_00940.1_g00011.1 128 DPGDVVFFQRQRSDYRRLFIGWRRR 152
                              *********98889999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-3936158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-3037152IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-2641143No hitNo description
SMARTSM010191.9E-2342153IPR003340B3 DNA binding domain
PfamPF023622.4E-2942152IPR003340B3 DNA binding domain
PROSITE profilePS5086313.35242153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSVNHYSTDH HHQQTLFWQH LHTTDASEPT TWLSEDQKES LFEKSLTPSD VGKLNRLVIP  60
KQHAEKYFPL NTTISSNADT SSSDKGMLLS FEDESGKWWR FRYSYWNSSQ SYVLTKGWSR  120
YVKDKQLDPG DVVFFQRQRS DYRRLFIGWR RRGQGSSSAL NTTSYSSSMA APSYLQINAS  180
SNMAPHSEYS HYGTAVTTAM ETHSIPSSSA VGSSRTVRLF GVNLECQKDE EDGDDSVATA  240
AVAECPYHDS YYGQNMYNYY TQPHNMNIGF MGDTMKQPGD RRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48381524113B3 domain-containing transcription factor NGA1
5os9_B1e-48381524113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00940.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475101.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-124Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A3P6AJN61e-161A0A3P6AJN6_BRAOL; Uncharacterized protein
STRINGBo3g003800.11e-161(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-122B3 family protein