PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00915.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 203aa MW: 23442.7 Da PI: 10.5402 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 95.3 | 7.4e-30 | 30 | 120 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+++GF +r+++ ++s +++g++++r++vC+keg+r+++ +++e++r++ra tr gCka ++vkkek+gkw vtk+++eH Rsa1.0_00915.1_g00009.1 30 SFYDNYATRTGFVMRVDAFRRStRDDGTVVWRRLVCNKEGFRRSRPRRDESRRKPRAITREGCKALIVVKKEKSGKWIVTKFVKEH 115 5*****************999978899*********************************************************** PP FAR1 86 nHela 90 nH+l Rsa1.0_00915.1_g00009.1 116 NHPLL 120 ***96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-28 | 30 | 120 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MMENTVTGEA SSAVEPFIGM DFESEEAAKS FYDNYATRTG FVMRVDAFRR STRDDGTVVW 60 RRLVCNKEGF RRSRPRRDES RRKPRAITRE GCKALIVVKK EKSGKWIVTK FVKEHNHPLL 120 SLLTNNGRRS SQISQTPDKK DAKIRELSTE LSRERKRCAA LQQQLDMVLN VMEEHSNHLS 180 ININNVIQNV REIESNTFTK PPS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 70 | 77 | RRSRPRRD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00915.1_g00009.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489049.1 | 1e-138 | PREDICTED: protein FAR1-RELATED SEQUENCE 7 | ||||
Swissprot | Q9SZL8 | 3e-27 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A397ZFM9 | 1e-121 | A0A397ZFM9_BRACM; Uncharacterized protein | ||||
STRING | Bo5g141470.1 | 1e-114 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-104 | FAR1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|