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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Rsa1.0_00911.1_g00015.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 279aa MW: 31200.5 Da PI: 10.292 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00911.1_g00015.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 344.1 | 3.4e-105 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalv 75
mdddg+ rn+gyyepa a++k nlglqlm si +r++k+ r+ nl + ++++++++ + m++ +++++
Rsa1.0_00911.1_g00015.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMPSI-DRNTKPflpgRDPNLMIGQQNGPYHHPEpppinnMSY----NWINQ------ 73
99**99..9*******999**************.9**************8899999999988999988999....*****...... PP
GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpke 161
++++k++++l+v+++ p++ ++l++t+s+ s+++ +++ +e+ +v+ +e+++i++++++ k + + ++ +k+
Rsa1.0_00911.1_g00015.1 74 QHKDKFFNMLPVTTA-----PHYGNILPETSSAPSMRH-HHQTTEEYPVK------SEQEEIVQTNKKRKPN-----AKPGAATKA 142
7899*******9997.....99************8887.66666666666......2334454433333333.....345566777 PP
GAGA_bind 162 kkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
kk +k+k+ +ek+ k++++++ +r+k kks+d+v+ngvs+D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS+yPLP+s
Rsa1.0_00911.1_g00015.1 143 KKPRKPKE-GEKD--KSTNNGNVSRVKPAKKSVDFVINGVSMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMYPLPMS 225
77777777.3333..3333333379************************************************************* PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tkrrgaRi+grKmSqgafkk+LekLa++G++++n +DLk+hWA+HGtnkfvtir
Rsa1.0_00911.1_g00015.1 226 TKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNSIDLKTHWARHGTNKFVTIR 279
*****************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 279 aa
Download sequence Send
to blast |
MDDDGFRNWG YYEPAAATFK GNLGLQLMPS IDRNTKPFLP GRDPNLMIGQ QNGPYHHPEP 60
PPINNMSYNW INQQHKDKFF NMLPVTTAPH YGNILPETSS APSMRHHHQT TEEYPVKSEQ 120
EEIVQTNKKR KPNAKPGAAT KAKKPRKPKE GEKDKSTNNG NVSRVKPAKK SVDFVINGVS 180
MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMY PLPMSTKRRG ARISGRKMSQ 240
GAFKKVLEKL ASDGFNFGNS IDLKTHWARH GTNKFVTIR
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC189499 | 1e-156 | AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence. |
