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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00907.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 560aa MW: 62711.8 Da PI: 6.5872 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00907.1_g00006.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 31.5 | 4.3e-10 | 262 | 318 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k+++
Rsa1.0_00907.1_g00006.1 262 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 318
57*******************4444.2344336655.7799999*************97 PP
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2 | AP2 | 49.7 | 9.1e-16 | 361 | 412 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Rsa1.0_00907.1_g00006.1 361 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 412
57****************988532...5************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 560 aa
Download sequence Send
to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE 60 AQLAASMAES TILTTFVDPQ THSIPKLEDF LGGDLRYSDN SQSETQDSSS LSQIYDPRHH 120 LNQNQNQNQT GFYSDNNDFK TMPGFQTAFS TNSGSEVDDS ASIARTHLPG EYLGHVVESS 180 GPELGFHGGA LSLGDSINNA NQRSNDTNQI TEHHHYQVNN ERINNINSSE KRDSEKEKPV 240 VAVETSDCSN KKVADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD 300 KEDKAARAYD LAALKYWNAA ATTNFPITNY SKELEEMKHM TKLEFIASLR RKSSGFSRGA 360 SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE 420 MNRYDVEAIM KSALPIGGAA KRLKLSLEAS ASAEQKPIIS HHHQQQLHHL QSSPNNSSIN 480 FALCPTNSAV ESQMVPCGIP FDVATLYHHQ QQQQQQNFFQ HFQASDSTGS SNNNNSNVQG 540 SMGLLAPNQA EFFLWPNQSY
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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