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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00897.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
bHLH |
Protein Properties |
Length: 206aa MW: 23657.3 Da PI: 4.5046 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00897.1_g00002.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.5 | 3.7e-11 | 56 | 99 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
+ Er+RR+++N+++ Lr+++P+ + Kl+Ka+i + + Y+++L
Rsa1.0_00897.1_g00002.1 56 VASERKRREKLNQRLLALRSVVPNiS------KLDKASIIRDSITYMQEL 99
578*********************66......***************987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MEDLDDEYKN YWETTMFFQN QELEFDSWPL EDVFSGSGES SSPDGAATSP VTSKNVASER 60 KRREKLNQRL LALRSVVPNI SKLDKASIIR DSITYMQELI DQEKKLEAEI RELESRSMLL 120 NNPTRDYDCI NNFPGNQQQD LSGIDAMRSK KSRHMDCNTF GTSITRMHNH SPIEVLEANE 180 EEKSTVETKI QTAIAAYNDP NCFINF
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 55 | 109 | 9 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 58 | 63 | ERKRRE |
2 | 59 | 64 | RKRREK |