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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00893.1_g00006.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
AP2 |
Protein Properties |
Length: 574aa MW: 64537.8 Da PI: 6.9697 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00893.1_g00006.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 31.5 | 4.5e-10 | 264 | 320 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k+++
Rsa1.0_00893.1_g00006.1 264 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 320
57*******************4444.2344336655.7799999*************97 PP
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2 | AP2 | 49.7 | 9.4e-16 | 363 | 414 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g
Rsa1.0_00893.1_g00006.1 363 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 414
57****************988532...5************************997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010080 | Biological Process | regulation of floral meristem growth |
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity |
GO:0035265 | Biological Process | organ growth |
GO:0048364 | Biological Process | root development |
GO:0060772 | Biological Process | leaf phyllotactic patterning |
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 574 aa
Download sequence Send
to blast |
MAPMTNWLTF SLSPMDMLRS SDQSQFVPYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE 60 AQIAASMADS TILTTFVDPQ THSHNHIPKL EDFLGDVRYS DNSQTETQDS SSLTHIYDPR 120 HQHNQNQTGF YSDHSHEFKT MAGYQTAFST NSGSEVEDSA SIGRTHLAGE YLGHVVESSG 180 GPELGFRGGA LSLGVNVNNN TNHRTSDDHN QIAEHHYRGN TNGERLNNSS QEKTISEKEK 240 PVVAVETSDC SNKKIADTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQARKGRQGG 300 YDKEDKAARA YDLAALKYWN ATATTNFPIT NYSKELEEMK HMTKQEFIAS LRRKSSGFSR 360 GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN 420 FEMNRYDVEA IMKSALPIGG AAKRLKLSLE AAASSEQKQV LGQHHQLHHF QQQQQQQHQQ 480 QQQLNHSSIN FALCPNSAVQ SQMIPCGIPF EAAALYHHQQ QQQQQQQQQN FFQHFPVNAA 540 SDSTGSNNNS NVQGSMGLMA PNQAEFFLWP NQSY
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Publications
? help Back to Top |
- Krizek BA
Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers. BMC Res Notes, 2015. 8: p. 556 [PMID:26459062] - Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis. Plant Physiol., 2016. 170(1): p. 283-93 [PMID:26537561] - Krizek BA, et al.
RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways. Plant Physiol., 2016. 171(3): p. 2069-84 [PMID:27208279] - Du Y,Scheres B
PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]
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