PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00889.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 41868.6 Da PI: 6.0836 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.8e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++ G+g +W + ++++g++R++k+c++rw++yl Rsa1.0_00889.1_g00001.1 14 KGPWSPEEDAKLKDYIESSGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Rsa1.0_00889.1_g00001.1 69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.88 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-25 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.72E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.385 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.64E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE SSGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK 120 QRKEFQEARM QQEMVMMKRQ QQGQGQFQIN GSTDLYLNNM FGSSAWPLLP QLPPPHSQVP 180 LVMMEPTSCN YYQTTPSCTL EQKPLITLKN MVKIEEEPER TNPDHHHHED SMTNSFDLSF 240 SQLLLDPNYY LESGGGGEGE FALMSSSTNS PLPNTSGDNH HHQHQQDILQ WFGGSSFQTE 300 AINDVFLNNN NNIANLETHE NPKLYGNSSV AGAGAALAGG TTSTSADQST ISWEDITSLV 360 NSDDASYFNG PNHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00889.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227472 | 0.0 | AK227472.1 Arabidopsis thaliana mRNA for transcription factor like protein, complete cds, clone: RAFL14-10-M08. | |||
GenBank | AY519647 | 0.0 | AY519647.1 Arabidopsis thaliana MYB transcription factor (At5g65790) mRNA, complete cds. | |||
GenBank | BT005994 | 0.0 | BT005994.1 Arabidopsis thaliana At5g65790 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018436906.1 | 0.0 | PREDICTED: transcription factor RAX3-like | ||||
Swissprot | Q9M2Y9 | 1e-127 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A0D3BEM9 | 0.0 | A0A0D3BEM9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BEH8 | 0.0 | A0A3P6BEH8_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g097710.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2941 | 25 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 1e-175 | myb domain protein 68 |
Publications ? help Back to Top | |||
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