PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00882.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 361aa    MW: 40560.9 Da    PI: 6.6813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00882.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.4e-30142199260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++v+ei+Y+g Hnh+k
  Rsa1.0_00882.1_g00004.1 142 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQVTEIIYKGGHNHPK 199
                              8***************************************9.***************85 PP
2WRKY103.89.5e-33297353359
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK+vkg+++prsYY+Ct++gC vkk+versaed+++v +tYeg+Hnh+
  Rsa1.0_00882.1_g00004.1 297 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVKKQVERSAEDERAVLTTYEGRHNHD 353
                              9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-24137200IPR003657WRKY domain
SuperFamilySSF1182905.36E-23138200IPR003657WRKY domain
SMARTSM007741.6E-30141199IPR003657WRKY domain
PROSITE profilePS5081120.484142200IPR003657WRKY domain
PfamPF031061.7E-22142198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34280355IPR003657WRKY domain
SuperFamilySSF1182901.57E-28287355IPR003657WRKY domain
PROSITE profilePS5081133.522290355IPR003657WRKY domain
SMARTSM007746.0E-38295354IPR003657WRKY domain
PfamPF031061.8E-25297353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDCYEQ GEDFLRGFYP ETNGSGLPKF KTAQPPPLPI SQPPQNFAFS  60
SSELLDSPLL LSSSHSLISP TTGAFPFPWQ IQSQSQPPNA ASALQEETYG VQDLQKKQDP  120
VPPPREFADR VPSYMVVSRN SNDGYGWRKY GQKQVKKSEN PRSYFKCTYP NCVSKKIVET  180
ASDGQVTEII YKGGHNHPKP EFTKRPSSSA NARRMFNPSS VASDQSESSS ISFDYGDLEQ  240
KSFKSEYGEI EEEDEQPEIK RQKREGEDEG MSVEVSRGVK EPRVVVQTIS EIDVLIDGFR  300
WRKYGQKVVK GNTNPRSYYK CTYQGCGVKK QVERSAEDER AVLTTYEGRH NHDIPTSLRR  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32142355877Probable WRKY transcription factor 4
2lex_A2e-32142355877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00882.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300430.0KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478533.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A087FWF30.0A0A087FWF3_ARAAL; Uncharacterized protein
STRINGA0A087FWF30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.11e-168WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]