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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00882.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 361aa MW: 40560.9 Da PI: 6.6813 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00882.1_g00004.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 94.7 | 6.4e-30 | 142 | 199 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++v+ei+Y+g Hnh+k
Rsa1.0_00882.1_g00004.1 142 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQVTEIIYKGGHNHPK 199
8***************************************9.***************85 PP
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2 | WRKY | 103.8 | 9.5e-33 | 297 | 353 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
Dg++WrKYGqK+vkg+++prsYY+Ct++gC vkk+versaed+++v +tYeg+Hnh+
Rsa1.0_00882.1_g00004.1 297 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVKKQVERSAEDERAVLTTYEGRHNHD 353
9*******************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MSSTSFTDLL ASSGVDCYEQ GEDFLRGFYP ETNGSGLPKF KTAQPPPLPI SQPPQNFAFS 60 SSELLDSPLL LSSSHSLISP TTGAFPFPWQ IQSQSQPPNA ASALQEETYG VQDLQKKQDP 120 VPPPREFADR VPSYMVVSRN SNDGYGWRKY GQKQVKKSEN PRSYFKCTYP NCVSKKIVET 180 ASDGQVTEII YKGGHNHPKP EFTKRPSSSA NARRMFNPSS VASDQSESSS ISFDYGDLEQ 240 KSFKSEYGEI EEEDEQPEIK RQKREGEDEG MSVEVSRGVK EPRVVVQTIS EIDVLIDGFR 300 WRKYGQKVVK GNTNPRSYYK CTYQGCGVKK QVERSAEDER AVLTTYEGRH NHDIPTSLRR 360 S
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF430043 | 0.0 | KF430043.1 Brassica rapa WRKY transcription factor 25 (WRKY25) mRNA, complete cds. |