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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00876.1_g00004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
SRS |
Protein Properties |
Length: 347aa MW: 37947.4 Da PI: 6.7849 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00876.1_g00004.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 223.3 | 4.7e-69 | 115 | 275 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.. 78
r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+qla + +k++++a + +r+ ++
Rsa1.0_00876.1_g00004.1 115 RHGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLAGLPTKRSRDAssgcgddD---DDREGDEng 197
6899****************************************************999998888766765431...222222234 PP
DUF702 79 ...kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
sal++ ++++a+s+ +e s+lP+evs +avfrc+rvss++d++ee+aYqtavsigGhvfkGiLydqG+++
Rsa1.0_00876.1_g00004.1 198 gqgGGGGGSALACIRVVNASSS-GFESSHLPPEVSLPAVFRCMRVSSIEDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 275
44456778999****9999765.99***************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MAGLFYLGGR DNNKQDHHHQ DKDHNEDRSN NYLHLYKDEI SNNNKGFEIW PPQYFQQQQE 60 QQNHLAHPTN FYSFGMVPGG SSHNNNRSSN RSLYFNVVPD HEPVRSSTGR FTVTRHGSMN 120 CQDCGNQAKK DCPHMRCRTC CKSRGFDCQT HVKSTWVPAA KRRERQAQLA GLPTKRSRDA 180 SSGCGDDDDD REGDENGGQG GGGGGSALAC IRVVNASSSG FESSHLPPEV SLPAVFRCMR 240 VSSIEDEDEE YAYQTAVSIG GHVFKGILYD QGPSDDHRYS SSPAAAAVET SQHHLNLLAS 300 ASSVATTTAV TASNIINASI DHSSVYTAAP INSFITPATS FFASPRS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GU205268 | 0.0 | GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds. |