PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00866.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 650aa    MW: 72653.5 Da    PI: 7.56
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00866.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.91.4e-1292746451373
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                              lv+lL+ c ea+++++ +++++++ar  elasp+g +pm+Rl++y+teALa r+ar++++++++ pp+e + ++ + +  al++++
  Rsa1.0_00866.1_g00005.1 274 LVNLLIGCLEAIRTRNIAAINHFIARTGELASPRGtTPMTRLISYYTEALALRVARMWPHIFHIAPPREFE-RTLEAADDALRFLN 358
                              689********************************99*********************************8.56666668999*** PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                              +v+Pi+kf h taN+++l+a+eg+ervH+iDfdi+qGlQWp+++q+LasRp++p ++RiTgvg+    sk+el+etg+rL+ fAe+
  Rsa1.0_00866.1_g00005.1 359 QVTPIPKFIHYTANSMLLRAFEGKERVHVIDFDIKQGLQWPSFFQSLASRPNPPRHVRITGVGE----SKHELNETGDRLHGFAEA 440
                              ****************************************************************....9***************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              +++pfef++ v++rled++l++L+vk+gEa+aVn+v q+h++l + +  +   ++++ lv+s++P  vvv+eqea+hns ++  r+
  Rsa1.0_00866.1_g00005.1 441 MRLPFEFHP-VVDRLEDVRLWMLHVKEGEAVAVNCVSQMHKTLYDGTGAAV--RDFVGLVRSTNPVAVVVAEQEAEHNSRQLEGRV 523
                              *********.7*******************************977766666..89******************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +++l+yysa+fd +++ l+ +s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q ++llr+
  Rsa1.0_00866.1_g00005.1 524 FNSLKYYSAVFDVMHKRLGVDSLMRVKIEEVLFGREIRNIVACEGSHRQERHVGFGQWRRMLEQLGFRSLGVSEREVLQSRMLLRM 609
                              ************************************************************************************** PP

                     GRAS 344 vk.sdg..yrve...eesgslvlgWkdrpLvsvSaW 373
                              ++ +d+  ++ve   e+ g ++l W d+pL++vSaW
  Rsa1.0_00866.1_g00005.1 610 YGdGDEefFNVErsdEDGGGVTLRWLDQPLYTVSAW 645
                              **6555889**97766678888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.494248620IPR005202Transcription factor GRAS
PfamPF035144.7E-127274645IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAAAAATSS TVSVHFPMNT QRLDLPCSSS NFSRKETPSS  60
RPLARSISLD NINTNNNKTG GCSLKQSIKL PPLATTRGNA DGFSWNNDNN NREKKSLKRL  120
AEDKEDESCL SRVKRQRGGE ETGGDDHNMG FWFEHFTPAP LPFSLTCSGD NNDDEKVISS  180
QPLPGHPHWV NSVITELAGL GDKDVETNRP ASGSSTSASA ESHSLRHSRV PQPTNGSRNP  240
YSQHQGSSSI EGRINNGNNN NNNHRNDSQR DLELVNLLIG CLEAIRTRNI AAINHFIART  300
GELASPRGTT PMTRLISYYT EALALRVARM WPHIFHIAPP REFERTLEAA DDALRFLNQV  360
TPIPKFIHYT ANSMLLRAFE GKERVHVIDF DIKQGLQWPS FFQSLASRPN PPRHVRITGV  420
GESKHELNET GDRLHGFAEA MRLPFEFHPV VDRLEDVRLW MLHVKEGEAV AVNCVSQMHK  480
TLYDGTGAAV RDFVGLVRST NPVAVVVAEQ EAEHNSRQLE GRVFNSLKYY SAVFDVMHKR  540
LGVDSLMRVK IEEVLFGREI RNIVACEGSH RQERHVGFGQ WRRMLEQLGF RSLGVSEREV  600
LQSRMLLRMY GDGDEEFFNV ERSDEDGGGV TLRWLDQPLY TVSAWSVGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6628164626379Protein SCARECROW
5b3h_A8e-6628164625378Protein SCARECROW
5b3h_D8e-6628164625378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00866.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457562.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078I9980.0A0A078I998_BRANA; BnaA09g12920D protein
STRINGBo00795s120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein