PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00853.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 27996 Da PI: 5.029 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.6 | 1e-18 | 23 | 75 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le F+++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Rsa1.0_00853.1_g00002.1 23 QRRFSDEQIKSLEMRFKSETRLEPRKMVQLARELGLQPRQVAIWFQNKRARWK 75 579*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.6 | 7.2e-38 | 22 | 112 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 ++rr+s+eq+k+LE+ F++e++Lep++ v+lareLglqprqva+WFqn+RAR+ktkqlE++++ L+++y+ l+++ e+L+ke++ L Rsa1.0_00853.1_g00002.1 22 NQRRFSDEQIKSLEMRFKSETRLEPRKMVQLARELGLQPRQVAIWFQNKRARWKTKQLETEFNILRQNYNDLASQFESLKKENQGL 107 68************************************************************************************ PP HD-ZIP_I/II 88 reelk 92 +el+ Rsa1.0_00853.1_g00002.1 108 VSELH 112 99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.617 | 17 | 77 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.39E-17 | 19 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-14 | 20 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.15E-13 | 23 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-17 | 23 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.3E-16 | 23 | 75 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.6E-5 | 48 | 57 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 52 | 75 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.6E-5 | 57 | 73 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.3E-13 | 77 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MMSADPFMTM KKMKKSIHNE NNQRRFSDEQ IKSLEMRFKS ETRLEPRKMV QLARELGLQP 60 RQVAIWFQNK RARWKTKQLE TEFNILRQNY NDLASQFESL KKENQGLVSE LHILNEERQT 120 KQDERRHCCD GQGVVTLGST DHESEKEENR RSEPEEVRPE MEVYEKSRHD DDDGYNNNIK 180 REYFVGFEEE ADHLMNIVEP ADSCLTSSDD WGGFKSNTNL LDQSSSNYPW WDFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00853.1_g00002.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352871 | 0.0 | AK352871.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-L20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481377.1 | 1e-176 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
Swissprot | P46897 | 1e-128 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A3P6CDA9 | 1e-142 | A0A3P6CDA9_BRACM; Uncharacterized protein | ||||
STRING | Bo4g197260.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2498 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-115 | homeobox 7 |
Publications ? help Back to Top | |||
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