PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00836.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 713aa    MW: 78884 Da    PI: 6.4716
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00836.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702160.69.5e-504936354154
                   DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 
                               ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p++  +++++  +++        ++  +k+ + + s+k s  +  
  Rsa1.0_00836.1_g00012.1 493 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWIPSSSSSQHHHSSSSS--------SDRYKKKLKIDPSDKPSVYTVP 570
                              6789**************************************99877753322222........2222223332222333333333 PP

                   DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                              +++s  ++ +  ++ lP +++++avf+++rv+++++ ++ e++Yq++v+i+Ghvf+G+L+++G+++
  Rsa1.0_00836.1_g00012.1 571 TTTSRRQE-TRFKEGLPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTINGHVFRGFLHYYGVDH 635
                              33333333.333344*******************9857789***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.3205.4E-197105IPR013812Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain
SuperFamilySSF493031.15E-177102IPR006102Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich
PfamPF163531.8E-158101IPR032312Beta-galactosidase, domain 4
Gene3DG3DSA:2.70.98.104.2E-95119410IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746501.11E-85124409IPR011013Galactose mutarotase-like domain
SMARTSM010382.7E-114128412IPR004199Beta galactosidase small chain/ domain 5
PfamPF029293.5E-77132409IPR004199Beta galactosidase small chain/ domain 5
PfamPF051421.5E-44495634IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.7E-26496536IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.4E-26585633IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009341Cellular Componentbeta-galactosidase complex
GO:0004565Molecular Functionbeta-galactosidase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MQLRLLSLQV ANAYFFNTTE ELEFSWTVHG DGVELGSGTL SIPVIKPQNS FDMEWKSGPW  60
FSLWNDSNAG ELFLTITAKL SNPTRSLEAG HLLSSTQIPL SSKREIIPQV IKERDSVITC  120
ETVGDFIKIS QQGSWELMIN VQKGAIESWK VQGVLLMNEA ILPCFWRAPT DNDKGGGDCS  180
YFSRWKAANL DNVEFIVESC SVKSTTDKAV EIEFIYLGSS ASESSKSDAL FKVNVTYIIY  240
GSGDIITNWY VVPNSDLPPL PRVGIEFHLE KTLDRVEWYG RGPFECYPDR KSAAHVGIYE  300
HNVADMHVPY IVPGECGGRT DVRWVTFTNK EGVGIYASTY GSSSPMQMNA SYYTTDELDR  360
ATHEEDLIKG QSIEVHLDHK HMGIGGDDSW TPCVHDKYLI PPEPYTFSIS CLHALIITST  420
VANPPSLLSW PPPHQPSSTI PDHHHSSSSA AVGISTPDYM LGLRNVILLP PPSQITHPSV  480
EADHNKPRNS NVEEKVCRDC GNRAKKECLF ERCRTCCKSR GYNCATHVKS TWIPSSSSSQ  540
HHHSSSSSSD RYKKKLKIDP SDKPSVYTVP TTTSRRQETR FKEGLPGKIE APAVFKRTRV  600
TAISNEEQSE IGYQATVTIN GHVFRGFLHY YGVDHNKAFP LLLDDVIVLV CEVVTGVNTK  660
LTIIVTNPSF NGGSVGSITL QSTVDGADCC TKALRKNELD SVGPVPPCGA LRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cvm_A1e-3414096261017Beta-galactosidase
6cvm_B1e-3414096261017Beta-galactosidase
6cvm_C1e-3414096261017Beta-galactosidase
6cvm_D1e-3414096261017Beta-galactosidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00836.1_g00012.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2221340.0AK222134.1 Arabidopsis thaliana mRNA for beta Galactosidase - like protein, complete cds, clone: RAFL22-95-N04.
GenBankAY0917800.0AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483245.10.0PREDICTED: uncharacterized protein LOC108854229
TrEMBLA0A3P6CJ230.0A0A3P6CJ23_BRAOL; Uncharacterized protein
STRINGBo4g119970.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2682522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54430.11e-81SHI-related sequence 6