PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00836.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 713aa MW: 78884 Da PI: 6.4716 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 160.6 | 9.5e-50 | 493 | 635 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstW+p++ +++++ +++ ++ +k+ + + s+k s + Rsa1.0_00836.1_g00012.1 493 EEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWIPSSSSSQHHHSSSSS--------SDRYKKKLKIDPSDKPSVYTVP 570 6789**************************************99877753322222........2222223332222333333333 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 +++s ++ + ++ lP +++++avf+++rv+++++ ++ e++Yq++v+i+Ghvf+G+L+++G+++ Rsa1.0_00836.1_g00012.1 571 TTTSRRQE-TRFKEGLPGKIEAPAVFKRTRVTAISNeEQSEIGYQATVTINGHVFRGFLHYYGVDH 635 33333333.333344*******************9857789***********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.40.320 | 5.4E-19 | 7 | 105 | IPR013812 | Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain |
SuperFamily | SSF49303 | 1.15E-17 | 7 | 102 | IPR006102 | Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich |
Pfam | PF16353 | 1.8E-15 | 8 | 101 | IPR032312 | Beta-galactosidase, domain 4 |
Gene3D | G3DSA:2.70.98.10 | 4.2E-95 | 119 | 410 | IPR014718 | Glycoside hydrolase-type carbohydrate-binding |
SuperFamily | SSF74650 | 1.11E-85 | 124 | 409 | IPR011013 | Galactose mutarotase-like domain |
SMART | SM01038 | 2.7E-114 | 128 | 412 | IPR004199 | Beta galactosidase small chain/ domain 5 |
Pfam | PF02929 | 3.5E-77 | 132 | 409 | IPR004199 | Beta galactosidase small chain/ domain 5 |
Pfam | PF05142 | 1.5E-44 | 495 | 634 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.7E-26 | 496 | 536 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.4E-26 | 585 | 633 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005975 | Biological Process | carbohydrate metabolic process | ||||
GO:0009341 | Cellular Component | beta-galactosidase complex | ||||
GO:0004565 | Molecular Function | beta-galactosidase activity | ||||
GO:0030246 | Molecular Function | carbohydrate binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 713 aa Download sequence Send to blast |
MQLRLLSLQV ANAYFFNTTE ELEFSWTVHG DGVELGSGTL SIPVIKPQNS FDMEWKSGPW 60 FSLWNDSNAG ELFLTITAKL SNPTRSLEAG HLLSSTQIPL SSKREIIPQV IKERDSVITC 120 ETVGDFIKIS QQGSWELMIN VQKGAIESWK VQGVLLMNEA ILPCFWRAPT DNDKGGGDCS 180 YFSRWKAANL DNVEFIVESC SVKSTTDKAV EIEFIYLGSS ASESSKSDAL FKVNVTYIIY 240 GSGDIITNWY VVPNSDLPPL PRVGIEFHLE KTLDRVEWYG RGPFECYPDR KSAAHVGIYE 300 HNVADMHVPY IVPGECGGRT DVRWVTFTNK EGVGIYASTY GSSSPMQMNA SYYTTDELDR 360 ATHEEDLIKG QSIEVHLDHK HMGIGGDDSW TPCVHDKYLI PPEPYTFSIS CLHALIITST 420 VANPPSLLSW PPPHQPSSTI PDHHHSSSSA AVGISTPDYM LGLRNVILLP PPSQITHPSV 480 EADHNKPRNS NVEEKVCRDC GNRAKKECLF ERCRTCCKSR GYNCATHVKS TWIPSSSSSQ 540 HHHSSSSSSD RYKKKLKIDP SDKPSVYTVP TTTSRRQETR FKEGLPGKIE APAVFKRTRV 600 TAISNEEQSE IGYQATVTIN GHVFRGFLHY YGVDHNKAFP LLLDDVIVLV CEVVTGVNTK 660 LTIIVTNPSF NGGSVGSITL QSTVDGADCC TKALRKNELD SVGPVPPCGA LRP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cvm_A | 1e-34 | 1 | 409 | 626 | 1017 | Beta-galactosidase |
6cvm_B | 1e-34 | 1 | 409 | 626 | 1017 | Beta-galactosidase |
6cvm_C | 1e-34 | 1 | 409 | 626 | 1017 | Beta-galactosidase |
6cvm_D | 1e-34 | 1 | 409 | 626 | 1017 | Beta-galactosidase |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00836.1_g00012.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK222134 | 0.0 | AK222134.1 Arabidopsis thaliana mRNA for beta Galactosidase - like protein, complete cds, clone: RAFL22-95-N04. | |||
GenBank | AY091780 | 0.0 | AY091780.1 Arabidopsis thaliana At3g54435 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483245.1 | 0.0 | PREDICTED: uncharacterized protein LOC108854229 | ||||
TrEMBL | A0A3P6CJ23 | 0.0 | A0A3P6CJ23_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g119970.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM26825 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54430.1 | 1e-81 | SHI-related sequence 6 |