PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Rsa1.0_00835.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 325aa MW: 37715.8 Da PI: 4.7189

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00835.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.3	2.9e-10	21	132	11	128
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 de ++ yL+ ++ + e ++ ++++++ +P++ ++e+ + F+ ++ r+ +sg W+ g+dk ++++ Rsa1.0_00835.1_g00007.1 21 DEKTMSIYLQSMKDSGDSWPEYFFGDTNLFTKNPSEVL----ESENPFFVFVYPITE--ACGRTDG-CDSGGWRIIGRDKLIKDEe 99 77788888888777666444456999999999999985....233444555554443..3345555.47899*********987 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ g kk+L f +++ +g k +Wvm+++rl Rsa1.0_00835.1_g00007.1 100 TGKILGFKKILKFCGETKARGYKRTWVMEQFRL 132 78889*****99*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.119	11	150	IPR003441	NAC domain
SuperFamily	SSF101941	9.42E-21	20	148	IPR003441	NAC domain
Pfam	PF02365	2.0E-5	20	132	IPR003441	NAC domain
PROSITE profile	PS51005	11.35	175	324	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-17	191	322	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEEIRVAKSA YTKDDHSKAN DEKTMSIYLQ SMKDSGDSWP EYFFGDTNLF TKNPSEVLES 60 ENPFFVFVYP ITEACGRTDG CDSGGWRIIG RDKLIKDEET GKILGFKKIL KFCGETKARG 120 YKRTWVMEQF RLPSKWNPKQ DHVVCKIQLL FQTEISYLLA KHFSYSSDLL PPTQSLPAYG 180 VCLANPQDDG AYHLQTIFDS VGNKWPSYVT NDVYCVHPST LVDHKDMRFL ESGLCIFADQ 240 TEDCGYTDGC ESGRWRIMEE HDAIYSMSYE VMGYRRVFKF CEEDEDKFFD IENGEEVLLT 300 WIMEEYRLVE EAMKDKVLCV IKLCR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00835.1_g00007.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438492.1	0.0	PREDICTED: uncharacterized protein LOC108810920
TrEMBL	A0A3P6FTR4	0.0	A0A3P6FTR4_BRAOL; Uncharacterized protein
STRING	Bo1g091580.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3704	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60280.1	1e-112	NAC domain containing protein 23