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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00825.1_g00014.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
WRKY |
Protein Properties |
Length: 483aa MW: 52530.8 Da PI: 7.112 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00825.1_g00014.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 109.2 | 1.9e-34 | 224 | 280 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers d++v+ei+Y+g+Hnhe
Rsa1.0_00825.1_g00014.1 224 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 280
8****************************************.***************8 PP
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2 | WRKY | 41.5 | 2.7e-13 | 397 | 434 | 22 | 59 |
EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
r Y+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
Rsa1.0_00825.1_g00014.1 397 RVNYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 434
667**********************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 483 aa
Download sequence Send
to blast |
MSEKEELPST SNKSTGAPSR PTLSLPPRPF TEMFFNGGVG FSPGPMTLVS NMFPDSDEFR 60 SFSQLLSGVM PSPAPAPAAA SSAASEEEGD NNNSSSGDVD PRFKQSRPTG LTISQSPSTM 120 FNVPPGLSPA MRLDSPSFLG LFSPIQGSYG MTHQQALAQV TAQAVQANAN NMLLPQTDYP 180 PPSSQVSSVQ PPQNQTTAPR ETSDTTTIIE HRSQQPLNVD KPADDGYNWR KYGQKQVKGS 240 EFPRSYYKCT SQGCPVKKKV ERSLDGQVTE IIYKGQHNHE PPQNTKRGNN RDSTANLNGS 300 SVNNSNTGNK TTREQHEAAS QATTEQMSEA SDSEEVGNGE TGVRKKVEDE PDPKRRSTEV 360 RVTEPAAATS HRTVTEPRII VQTTSEVDLL DDGYRWRVNY KCTTQGCGVR KHVERAATDP 420 KAVVTTYEGK HNHDLPASKS SSHSAAAAAH LRLENRPGGS ANLNQQQQQQ PVARLRLKEE 480 QII
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC246567 | 0.0 | KC246567.1 Brassica napus WRKY transcription factor 4.1 (WRKY4.1) mRNA, complete cds. |