PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00825.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 483aa    MW: 52530.8 Da    PI: 7.112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00825.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.21.9e-34224280259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dDgynWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers  d++v+ei+Y+g+Hnhe
  Rsa1.0_00825.1_g00014.1 224 DDGYNWRKYGQKQVKGSEFPRSYYKCTSQGCPVKKKVERSL-DGQVTEIIYKGQHNHE 280
                              8****************************************.***************8 PP
2WRKY41.52.7e-133974342259
                              EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  22 rsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              r  Y+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  Rsa1.0_00825.1_g00014.1 397 RVNYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 434
                              667**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-30218282IPR003657WRKY domain
SuperFamilySSF1182901.7E-26222282IPR003657WRKY domain
SMARTSM007744.4E-39223281IPR003657WRKY domain
PROSITE profilePS5081125.545224282IPR003657WRKY domain
PfamPF031061.6E-26224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-16375436IPR003657WRKY domain
SuperFamilySSF1182901.83E-15382436IPR003657WRKY domain
PROSITE profilePS5081121.884385436IPR003657WRKY domain
SMARTSM007745.3E-14390435IPR003657WRKY domain
PfamPF031062.1E-9397434IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MSEKEELPST SNKSTGAPSR PTLSLPPRPF TEMFFNGGVG FSPGPMTLVS NMFPDSDEFR  60
SFSQLLSGVM PSPAPAPAAA SSAASEEEGD NNNSSSGDVD PRFKQSRPTG LTISQSPSTM  120
FNVPPGLSPA MRLDSPSFLG LFSPIQGSYG MTHQQALAQV TAQAVQANAN NMLLPQTDYP  180
PPSSQVSSVQ PPQNQTTAPR ETSDTTTIIE HRSQQPLNVD KPADDGYNWR KYGQKQVKGS  240
EFPRSYYKCT SQGCPVKKKV ERSLDGQVTE IIYKGQHNHE PPQNTKRGNN RDSTANLNGS  300
SVNNSNTGNK TTREQHEAAS QATTEQMSEA SDSEEVGNGE TGVRKKVEDE PDPKRRSTEV  360
RVTEPAAATS HRTVTEPRII VQTTSEVDLL DDGYRWRVNY KCTTQGCGVR KHVERAATDP  420
KAVVTTYEGK HNHDLPASKS SSHSAAAAAH LRLENRPGGS ANLNQQQQQQ PVARLRLKEE  480
QII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28224437878Probable WRKY transcription factor 4
2lex_A2e-28224437878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00825.1_g00014.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2465670.0KC246567.1 Brassica napus WRKY transcription factor 4.1 (WRKY4.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438796.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLV5RG410.0V5RG41_BRACM; WRKY transcription factor 4
STRINGBra019697.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]