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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00816.1_g00023.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
HD-ZIP |
Protein Properties |
Length: 340aa MW: 37846.3 Da PI: 8.8635 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00816.1_g00023.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.3 | 5.4e-18 | 189 | 243 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Rsa1.0_00816.1_g00023.1 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTK 243
678899***********************************************98 PP
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2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 189 | 279 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rlsk+q+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+e
Rsa1.0_00816.1_g00023.1 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKE 274
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreelk 92
Lr +lk
Rsa1.0_00816.1_g00023.1 275 LR-ALK 279
*9.555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MELALCLGDN TNKFSFMEKP SKTNNNPSAS STSTSDKDLG FNMGLDVLGF GGHRSLSSSS 60 SPSAEDEKKK NKRKPTPKAN DSDGFRVSSS VDPSLQLQLH FPWLPENSRR GGRMLSGAAT 120 VPEEEEEAAL SMSVSPPDSV TSSFRLDFGI KSYGYERRNN KRDIENDEVE RSTSRASNED 180 NDDDNGATRK KLRLSKDQSA FLEDSFKEHS TLNPKQKIAL AKQLNLRPRQ VEVWFQNRRA 240 RTKLKQTEVD CEYLKRCCES LTEENRRLQK EVKELRALKT SSPFCMQLPA TTLTMCPSCE 300 RVATSVSQPS TSAAHNIDLS KSSFHSPLIP VKPGTGKQVS
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 66 | 74 | EKKKNKRKP |
2 | 187 | 193 | TRKKLRL |
3 | 237 | 245 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |