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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00816.1_g00002.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
ERF |
Protein Properties |
Length: 262aa MW: 29541 Da PI: 6.8984 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00816.1_g00002.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 62.5 | 9e-20 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa a+++a++k++g
Rsa1.0_00816.1_g00002.1 91 HYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAALAYDEAALKFKG 140
7********.**********93....36************************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 262 aa
Download sequence Send
to blast |
MANQRNYGKM PFLAGESEEK KEVDDEENIF PFLSARSQYD TRAMVSALTQ VIGNQSSTHD 60 TNQHHPVEYN QQDPIQHVPP TQDQGNLRKR HYRGVRQRPW GKWAAEIRDP QKAARVWLGT 120 FETAEAAALA YDEAALKFKG SKAKLNFPER AQLASNTSTI TGPPNYYSSN NQIYYSNPQT 180 NPGQTIPYYN QYYYNQYLQQ GGNNNDSLSY SLASGETGGS MYNHQSLSTT TSSSSGGSSR 240 QQQEQDYARF WHFGDSSPNS GF
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Functional Description ? help
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Source |
Description |
UniProt | Acts as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB493741 | 0.0 | AB493741.1 Arabidopsis thaliana At5g07310 mRNA for hypothetical protein, partial cds, clone: RAAt5g07310. |
GenBank | AY560885 | 0.0 | AY560885.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g07310) mRNA, complete cds. |
GenBank | BT025717 | 0.0 | BT025717.1 Arabidopsis thaliana At5g07310 mRNA, complete cds. |
GenBank | DQ653268 | 0.0 | DQ653268.1 Arabidopsis thaliana clone 0000012872_0000009284 unknown mRNA. |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Zhang Y, et al.
Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development. Nucleic Acids Res., 2016. 44(3): p. 1271-84 [PMID:26721386] - Zhang Y, et al.
TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance. Plant Physiol., 2016. 171(1): p. 483-93 [PMID:26969721] - Heyman J, et al.
The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356] - Kong X, et al.
PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]
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