|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Rsa1.0_00801.1_g00003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
WRKY |
Protein Properties |
Length: 676aa MW: 72664 Da PI: 6.337 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00801.1_g00003.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 101.9 | 3.8e-32 | 262 | 319 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k
Rsa1.0_00801.1_g00003.1 262 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCPVKKKVERSR-EGHITEIIYKGAHNHSK 319
8****************************************.***************85 PP
|
2 | WRKY | 103.9 | 9e-33 | 478 | 536 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
Rsa1.0_00801.1_g00003.1 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 536
59********************************************************7 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0009942 | Biological Process | longitudinal axis specification |
GO:0030010 | Biological Process | establishment of cell polarity |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 676 aa
Download sequence Send
to blast |
MSGFDENVAI MGEWVPCNPT PGTLFSSAIG EDKNSKRVLE RELSLNHGQV TGLQEDTNGN 60 DDNNNDSPTQ NNVSRGGGLR ERIAARAGFN TPKLNTENIR SNAGFSMDSN LRSPCLTISS 120 PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVNSNGL FSDKAKDEFF DNIGASFTFQ 180 PVSRSSSSFF QGAATEMVPV DYGNYNNGSS HQSREDVTKN IGYTGQKRKT SESQEEEEEG 240 EGEEEQRRGG GGDSMVGGAP AEDGYNWRKY GQKLVKGSEY PRSYYKCTNP NCPVKKKVER 300 SREGHITEII YKGAHNHSKP PPNRRSGMQV DGTDQADQQQ QRDSAPTWVS CNNNQQQVGS 360 NEKNNVQEGF DYGNQSGSVQ GQTGGGGQFE SGDGNGGVVV VDASSTFSNE EDEDDRGTHG 420 SASLGYDGGG GGGGGGEGDE SESKRRKLEA YAAEMSGATR AIREPRVVVQ TTSDVDILDD 480 GYRWRKYGQK VVKGNPNPRS YYKCTAPGCT VRKHVERASH DLKSVITTYE GKHNHDVPAA 540 RNSSHGGGGG NGNNSGGGSA AQAHHHYQEQ PRGRYERQLT ASNQSPFGRP FSFQPHLGPP 600 SGFSFGLGQT GLANLSLPGL AFGQGKLPGL PHHPYMSQPG GMSEAMMHRG MEPKVEPVSE 660 TGQSVYNQIM SRLPQI
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | FJ012166 | 0.0 | FJ012166.1 Brassica napus WRKY2 transcription factor (WRKY2) mRNA, partial cds. |