PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00801.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 676aa MW: 72664 Da PI: 6.337 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.9 | 3.8e-32 | 262 | 319 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkgse+prsYY+Ct ++Cpvkkkvers+ +++++ei+Y+g Hnh+k Rsa1.0_00801.1_g00003.1 262 EDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCPVKKKVERSR-EGHITEIIYKGAHNHSK 319 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.9 | 9e-33 | 478 | 536 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ Rsa1.0_00801.1_g00003.1 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 536 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-28 | 259 | 320 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 259 | 320 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-35 | 261 | 319 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.491 | 262 | 320 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 262 | 317 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.7E-37 | 463 | 538 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 470 | 538 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.136 | 473 | 538 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-37 | 478 | 537 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-25 | 479 | 536 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MSGFDENVAI MGEWVPCNPT PGTLFSSAIG EDKNSKRVLE RELSLNHGQV TGLQEDTNGN 60 DDNNNDSPTQ NNVSRGGGLR ERIAARAGFN TPKLNTENIR SNAGFSMDSN LRSPCLTISS 120 PGLSPATLLE SPVFLSNPLA QPSPTTGKFP FLPGVNSNGL FSDKAKDEFF DNIGASFTFQ 180 PVSRSSSSFF QGAATEMVPV DYGNYNNGSS HQSREDVTKN IGYTGQKRKT SESQEEEEEG 240 EGEEEQRRGG GGDSMVGGAP AEDGYNWRKY GQKLVKGSEY PRSYYKCTNP NCPVKKKVER 300 SREGHITEII YKGAHNHSKP PPNRRSGMQV DGTDQADQQQ QRDSAPTWVS CNNNQQQVGS 360 NEKNNVQEGF DYGNQSGSVQ GQTGGGGQFE SGDGNGGVVV VDASSTFSNE EDEDDRGTHG 420 SASLGYDGGG GGGGGGEGDE SESKRRKLEA YAAEMSGATR AIREPRVVVQ TTSDVDILDD 480 GYRWRKYGQK VVKGNPNPRS YYKCTAPGCT VRKHVERASH DLKSVITTYE GKHNHDVPAA 540 RNSSHGGGGG NGNNSGGGSA AQAHHHYQEQ PRGRYERQLT ASNQSPFGRP FSFQPHLGPP 600 SGFSFGLGQT GLANLSLPGL AFGQGKLPGL PHHPYMSQPG GMSEAMMHRG MEPKVEPVSE 660 TGQSVYNQIM SRLPQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-37 | 262 | 539 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-37 | 262 | 539 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00801.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012166 | 0.0 | FJ012166.1 Brassica napus WRKY2 transcription factor (WRKY2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018456972.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A078IK00 | 0.0 | A0A078IK00_BRANA; BnaC09g53550D protein | ||||
STRING | Bo9g123740.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7954 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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