PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00795.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SAP
Protein Properties Length: 376aa    MW: 42350 Da    PI: 7.3291
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00795.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP617.43.1e-188237583454
                      SAP  83 wravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfa 168
                              w+avsrsd+lwq l+r++W+rt+l++dtWr+e+iy+hrtarnf+tr y +vtl+fdp+dvde   +d+lsCrcl+lsd ylaaGfa
  Rsa1.0_00795.1_g00009.1   2 WQAVSRSDHLWQLLSRQVWARTRLMHDTWRDEFIYWHRTARNFQTRSYVHVTLNFDPSDVDE---PDSLSCRCLTLSDLYLAAGFA 84 
                              **********************************************************9998...689****************** PP

                      SAP 169 dGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsg 254
                              dG+vrlf l++rlhv+t++p  rdr+GrfsravsGivisdsrlvfat+dGdihva+i+g g +++r+a++Gd+vndGalvdf+G+g
  Rsa1.0_00795.1_g00009.1  85 DGTVRLFLLNSRLHVRTLRPPPRDRFGRFSRAVSGIVISDSRLVFATMDGDIHVAEINGLG-SHTRTAFVGDIVNDGALVDFTGCG 169
                              ***********************************************************88.89********************** PP

                      SAP 255 rWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreee 340
                              r+wvGl+aGvpGrafhiWd+  ee++fvGGsltdPeavmGWh+ltelt ++Gr+r+++ etavaCt++r++v+dlrnqgv+++e+e
  Rsa1.0_00795.1_g00009.1 170 RYWVGLFAGVPGRAFHIWDCINEETTFVGGSLTDPEAVMGWHTLTELTMSLGRLRISGGETAVACTRWRIMVIDLRNQGVIIGEDE 255
                              **********************************************************************************9988 PP

                      SAP 341 er.rGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrer 424
                              e+ rGl v+++da++++yv++dsrG+a+vrrv + e+vc+frv++ aqr+v+gCvn+ +al++aggv+rvW++++ ++ylys+rer
  Rsa1.0_00795.1_g00009.1 256 EQrRGLTVTGFDANDQVYVRMDSRGNAIVRRVRTQETVCEFRVSRaAQRRVMGCVNTLHALMCAGGVMRVWDVQRGGEYLYSFRER 341
                              8779***************************************999**************************************** PP

                      SAP 425 vgevnalvaddrhvavsss....dgtihlldfga 454
                              vgev+a+va+drhvav+ss     +tihl+dfga
  Rsa1.0_00795.1_g00009.1 342 VGEVDAIVANDRHVAVASSsstaVSTIHLWDFGA 375
                              ****************9984444468*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509781.36E-1268141IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.1E-1070142IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.36E-12202372IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.1E-10247373IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MWQAVSRSDH LWQLLSRQVW ARTRLMHDTW RDEFIYWHRT ARNFQTRSYV HVTLNFDPSD  60
VDEPDSLSCR CLTLSDLYLA AGFADGTVRL FLLNSRLHVR TLRPPPRDRF GRFSRAVSGI  120
VISDSRLVFA TMDGDIHVAE INGLGSHTRT AFVGDIVNDG ALVDFTGCGR YWVGLFAGVP  180
GRAFHIWDCI NEETTFVGGS LTDPEAVMGW HTLTELTMSL GRLRISGGET AVACTRWRIM  240
VIDLRNQGVI IGEDEEQRRG LTVTGFDAND QVYVRMDSRG NAIVRRVRTQ ETVCEFRVSR  300
AAQRRVMGCV NTLHALMCAG GVMRVWDVQR GGEYLYSFRE RVGEVDAIVA NDRHVAVASS  360
SSTAVSTIHL WDFGAL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00795.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459706.10.0PREDICTED: transcriptional regulator STERILE APETALA
SwissprotQ9FKH10.0SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A397ZJ070.0A0A397ZJ07_BRACM; Uncharacterized protein
STRINGBra035375.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.10.0SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]