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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00786.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 186aa MW: 21259.5 Da PI: 9.1657 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.9 | 1.5e-11 | 112 | 144 | 20 | 51 |
S-EEEEEE-STT---EEEEEE-S.SSTTEEEEE CS WRKY 20 fprsYYrCtsagCpvkkkversa.edpkvveit 51 f +sYY+Cts+gCpv+k+ver+a +dpk+++it Rsa1.0_00786.1_g00004.1 112 FCKSYYKCTSSGCPVRKHVERQAsHDPKATTIT 144 689*****************9752799988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-17 | 53 | 145 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.531 | 63 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-7 | 68 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-8 | 112 | 144 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-8 | 112 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MWVYREGFWR STTCHRPLSK LVNLNNLLQL TGVVKLRRLD GIMETTPLVK PIREPRVVFQ 60 ILGTIVILYD GNMWDEYGQK VVRGYSNSSL DSLWNWVWNM EDIMLRNVPL AFCKSYYKCT 120 SSGCPVRKHV ERQASHDPKA TTITMYSLQS LAAIMTTSLG SDQMKHTPSA SGVGILSDEH 180 DHSHRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00786.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413158.1 | 1e-29 | probable WRKY transcription factor 20 isoform X1 | ||||
Refseq | XP_024005405.1 | 6e-30 | probable WRKY transcription factor 20 isoform X2 | ||||
Refseq | XP_024005407.1 | 6e-30 | probable WRKY transcription factor 20 isoform X3 | ||||
Refseq | XP_024005408.1 | 6e-30 | probable WRKY transcription factor 20 isoform X4 | ||||
TrEMBL | E4MWM0 | 2e-28 | E4MWM0_EUTHA; mRNA, clone: RTFL01-11-P10 | ||||
TrEMBL | V4P558 | 2e-28 | V4P558_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413158.1 | 4e-29 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM37833 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 2e-31 | WRKY family protein |