PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00767.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 354aa    MW: 40269.3 Da    PI: 6.7022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00767.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05194213120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++Cp C k+F+r  n++ H+
  Rsa1.0_00767.1_g00007.1 194 FSCPLCYKTFNRYNNMQMHM 213
                              89*****************9 PP
2zf-C2H2130.00032278300123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C  Cgk F  k + ++H +++
  Rsa1.0_00767.1_g00007.1 278 FACRRCGKAFAVKGDWRTHEKNC 300
                              78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-5189217No hitNo description
PROSITE profilePS5015710.201194221IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-5194213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SuperFamilySSF576673.12E-6264298No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6265298IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSDPACIFNN DCYDYSFNYS TSLSHIYNSN GSFYYPRNTT VIDPNSNLPE SPPLREALPL  60
LSLSPIHKQQ EDNVPQHEYY FMETTENSSN SNFLVHDLDQ CQESTHHHDV TVDLHLGLSN  120
PGGDAIGYGG GGSSSSDVIL DSTEQEHHHE HHQDRHQYHG VEVASDHHDG VQRGSHNHYW  180
IPTPSQILMG PTQFSCPLCY KTFNRYNNMQ MHMWGHGSEY RKGPESLRGT QPTGMLKLPC  240
YCCAPGCKNN IEHPRARPLK DFRTLQTHYK RKHGARPFAC RRCGKAFAVK GDWRTHEKNC  300
GRLWYCSCGS DFKHKRSLKD HVKAFGNGHV PCFGTDCFGD HEDEEAASDV EQQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00767.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486739.10.0PREDICTED: zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A397ZDQ60.0A0A397ZDQ6_BRACM; Uncharacterized protein
STRINGBra031239.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.11e-179WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]