PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00741.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 145aa    MW: 15404.2 Da    PI: 4.5966
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00741.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.24.3e-5722119198
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ng+dllwa+atlGfedy+eplkvy
  Rsa1.0_00741.1_g00004.1  22 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGEDLLWAMATLGFEDYLEPLKVY 107
                              69************************************************************************************ PP

                    NF-YB  87 lkkyrelegekk 98 
                              l++yreleg++k
  Rsa1.0_00741.1_g00004.1 108 LARYRELEGDNK 119
                              *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5320130IPR009072Histone-fold
SuperFamilySSF471134.35E-4125132IPR009072Histone-fold
PfamPF008087.5E-282892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-215674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-217593No hitNo description
PRINTSPR006151.1E-2194112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MADAPSSPAG DGGESGGGGG SVREQDRYLP IANISRIMKK ALPPNGKIGK DAKDTVQECV  60
SEFISFITSE ASDKCQKEKR KTVNGEDLLW AMATLGFEDY LEPLKVYLAR YRELEGDNKG  120
SGKSGDGSNR DAAAGAPGED MPVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-4821113193NF-YB
4awl_B1e-4821113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-4821113294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00741.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532481e-135AK353248.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411113.17e-93nuclear transcription factor Y subunit B-1
RefseqXP_024003672.17e-93nuclear transcription factor Y subunit B-1
SwissprotQ9SLG02e-91NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A1J3FIT82e-91A0A1J3FIT8_NOCCA; Nuclear transcription factor Y subunit B-1
TrEMBLE4MXK12e-91E4MXK1_EUTHA; mRNA, clone: RTFL01-27-P17
TrEMBLV4P0182e-91V4P018_EUTSA; Uncharacterized protein
STRINGXP_006411113.13e-92(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-72nuclear factor Y, subunit B1