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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00718.1_g00008.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MIKC_MADS |
Protein Properties |
Length: 508aa MW: 58146.9 Da PI: 9.7369 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00718.1_g00008.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fss+gkl+eys+
Rsa1.0_00718.1_g00008.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYST 59
79***********************************************96 PP
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2 | K-box | 99.9 | 3.7e-33 | 79 | 171 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90
+ + + +++e++ e+akLk+++e L++++R+++GedLesLslkeLq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq++
Rsa1.0_00718.1_g00008.1 79 QLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLESLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDH 164
5566677899**************************************************************************** PP
K-box 91 nkaLrkk 97
n++L kk
Rsa1.0_00718.1_g00008.1 165 NNTLLKK 171
****998 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 8.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.688 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.67E-39 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.1E-27 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.426 | 88 | 178 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS50011 | 14.294 | 248 | 508 | IPR000719 | Protein kinase domain |
SuperFamily | SSF56112 | 9.55E-29 | 310 | 455 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 1.4E-11 | 311 | 375 | No hit | No description |
SMART | SM00220 | 2.5E-5 | 321 | 488 | IPR000719 | Protein kinase domain |
Pfam | PF07714 | 1.6E-4 | 323 | 375 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
PROSITE pattern | PS00107 | 0 | 327 | 354 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 7.4E-17 | 377 | 454 | No hit | No description |
Pfam | PF00069 | 1.8E-12 | 388 | 454 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00108 | 0 | 411 | 423 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0006468 | Biological Process | protein phosphorylation |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010154 | Biological Process | fruit development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0004672 | Molecular Function | protein kinase activity |
GO:0005524 | Molecular Function | ATP binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 508 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD 60 SCMERILERY DRYLYSDRQL VGRDISQSEN WVLEHAKLKA RVEVLEKNKR NFMGEDLESL 120 SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNTLLK KREGEENGSS 180 RRTINPMHQQ VFNPSAPILF NLIQMTNAGN CRLLSKDSSK DLWSSFDNPT DKLLSTQSLD 240 VGRNLSSRRT ETGFGKGKFI RLHLTTMMKK VDRWKKKYPL SYGQRSATIS SDTLIKVLKI 300 DFANLMLLDL YKKKKLEEAT RNFMEELGRG AYGIVYKGFL KGAGDSQVTL AVKKVDPVAQ 360 EGEKEFRNEV KAIGKTFLFK RPRPNWKDRR IIAVEISHGI LYLHEECCEQ ILHCDIKPQN 420 ILLDESYSPR ISDLGLAKLL RMKQTNTLTN IRGTKGRLVD LIEDDVEAME DMEMMLEGVA 480 QVHDPPSTSP YSIFSCEEDL SCGPVSRV
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ505841 | 0.0 | AJ505841.1 Brassica oleracea var. botrytis partial mRNA for MADS-box protein FUL-a. |