PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00675.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GATA

Protein Properties

Length: 258aa MW: 28594.8 Da PI: 8.2941

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00675.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.2	2.2e-18	172	206	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l Rsa1.0_00675.1_g00007.1 172 CTHCASDKTPQWRTGPLGPKTLCNACGVRFKSGRL 206 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	6.0E-91	2	257	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.266	166	202	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.9E-15	166	216	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.04E-14	170	230	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.8E-13	170	204	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.20E-14	171	218	No hit	No description
PROSITE pattern	PS00344	0	172	197	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.0E-16	172	206	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDLYGLSSPD MLRIDDLLDF SNEDIFSASS STSTAATSSS SFPPPQNPNF HHHHLPSSAD 60 HSFLHDICVP SDDAAHLEWL SQFVDDSFAD FPANPLGGTM TSVKTETSFP GKPRSKRSRA 120 PAAFAGTWAP MPEYDQQVHV TGKSKPKKEQ SSGGGRHHQS TAETAEGGMR RCTHCASDKT 180 PQWRTGPLGP KTLCNACGVR FKSGRLVPEY RPASSPTFVL TQHSNSHRKV MELRRQKEVM 240 RQPQHVPLHH HHHHHPPF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00675.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189242	0.0	AC189242.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB016N13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018436974.1	0.0	PREDICTED: GATA transcription factor 2
Swissprot	O49741	1e-135	GATA2_ARATH; GATA transcription factor 2
TrEMBL	V4LH94	1e-155	V4LH94_EUTSA; GATA transcription factor
STRING	XP_006397685.1	1e-156	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3203	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	1e-121	GATA transcription factor 2

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]