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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00672.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 249aa MW: 28834.9 Da PI: 7.3055 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.7 | 8.6e-32 | 40 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k ltpsdv+k++rlv+pk++ae++ e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+ Rsa1.0_00672.1_g00002.1 40 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaADAMEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDV 125 99*****************************99555568889******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 ++F++++ ++++++++++r+ Rsa1.0_00672.1_g00002.1 126 ILFHRHRVDGGRFFISWRRR 145 ****87779**9*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-40 | 34 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-31 | 37 | 146 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.81E-28 | 39 | 144 | No hit | No description |
SMART | SM01019 | 5.1E-24 | 40 | 146 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.226 | 40 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-29 | 40 | 145 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSINQYSSDF NYHALMCQQH QHQHHHHHRN DVVEEKEALF EKPLTPSDVG KLNRLVIPKQ 60 HAERYFPLAA AAADAMEKGL LLCFEDEEGK PWRFRYSYWN SSQSYVLTKG WSRYVKEKQL 120 DAGDVILFHR HRVDGGRFFI SWRRRGDSSS SSDSYRHLQS NASIQYYPHA GAQAAESQRG 180 NSKTLRLFGV NMECQLDSDW SDPSTPNGST VCPTSHDQFH LYPQQHYPPP YYMDISFTGD 240 VHQTRSPQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 7e-49 | 33 | 145 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-49 | 33 | 145 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00672.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232575 | 0.0 | AC232575.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010A05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437389.1 | 0.0 | PREDICTED: B3 domain-containing protein At2g36080-like | ||||
Swissprot | Q8GYJ2 | 1e-143 | Y2608_ARATH; B3 domain-containing protein At2g36080 | ||||
TrEMBL | A0A397Z9X0 | 1e-159 | A0A397Z9X0_BRACM; Uncharacterized protein | ||||
STRING | Bra005301.1-P | 1e-156 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.1 | 1e-133 | B3 family protein |
Publications ? help Back to Top | |||
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