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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00672.1_g00002.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
Family |
B3 |
Protein Properties |
Length: 249aa MW: 28834.9 Da PI: 7.3055 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00672.1_g00002.1 | genome | RGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 100.7 | 8.6e-32 | 40 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79
f+k ltpsdv+k++rlv+pk++ae++ e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+
Rsa1.0_00672.1_g00002.1 40 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaADAMEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDV 125
99*****************************99555568889******************************************** PP
EEEEE-SSSEE..EEEEE-S CS
B3 80 vvFkldgrsefelvvkvfrk 99
++F++++ ++++++++++r+
Rsa1.0_00672.1_g00002.1 126 ILFHRHRVDGGRFFISWRRR 145
****87779**9*****997 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MSINQYSSDF NYHALMCQQH QHQHHHHHRN DVVEEKEALF EKPLTPSDVG KLNRLVIPKQ 60 HAERYFPLAA AAADAMEKGL LLCFEDEEGK PWRFRYSYWN SSQSYVLTKG WSRYVKEKQL 120 DAGDVILFHR HRVDGGRFFI SWRRRGDSSS SSDSYRHLQS NASIQYYPHA GAQAAESQRG 180 NSKTLRLFGV NMECQLDSDW SDPSTPNGST VCPTSHDQFH LYPQQHYPPP YYMDISFTGD 240 VHQTRSPQG
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 7e-49 | 33 | 145 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 7e-49 | 33 | 145 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC232575 | 0.0 | AC232575.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010A05, complete sequence. |