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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00670.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TCP | ||||||||
Protein Properties | Length: 310aa MW: 34575.5 Da PI: 8.1632 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.2 | 6.2e-34 | 73 | 208 | 2 | 119 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+d++sk+++WLl++ak++i+el+ ++ s+++++ ++++s + s++ Rsa1.0_00670.1_g00003.1 73 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGLDQPSKAVDWLLNAAKEEIDELPPLPVSPETFSlfNHHQSFLNLSQP 158 689*************************************************************9999988877777777777755 PP TCP 86 ssg...............kaaksaa.kskksqksaasalnlak.esrakar 119 + + ++++ ++ +++++ s +++ e++++++ Rsa1.0_00670.1_g00003.1 159 PGQdptqlgfkingcvedQ-PNTTTsREETNSHHTGSYGTYQNmEQHQQQH 208 5557788888887777642.2222223333444443333333322222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-30 | 75 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.748 | 75 | 133 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MNTVPWRDAN DDVSGGIRTR RDGEVQKDTE EAVVATSGKP VIKKPPTSIS SSSSSSSWMK 60 SKDPRIVRVS RAFGGKDRHS KVCTLRGLRD RRVRLSVPTA IQLYDLQERL GLDQPSKAVD 120 WLLNAAKEEI DELPPLPVSP ETFSLFNHHQ SFLNLSQPPG QDPTQLGFKI NGCVEDQPNT 180 TTSREETNSH HTGSYGTYQN MEQHQQQHTR FQADYPHHHQ HQLHSLVPIQ SQFLVCPVTA 240 PSTTTTIQSL FPSSSSAGSR TMETTDPRQM VSHFQMPLMG SFSSSQNISS LYSLLHGSSN 300 PMPSVQFDRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-18 | 80 | 134 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-18 | 80 | 134 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00670.1_g00003.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232459 | 0.0 | AC232459.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB020F06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489088.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
Swissprot | Q9S7W5 | 1e-154 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | A0A0D3CNA7 | 0.0 | A0A0D3CNA7_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ERH9 | 0.0 | A0A3P6ERH9_BRAOL; Uncharacterized protein (Fragment) | ||||
STRING | Bo5g152840.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.2 | 1e-147 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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