PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 318aa MW: 35363.2 Da PI: 4.6043

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00666.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46	1.3e-14	115	162	2	53
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 + GVr++k +g+W+AeIr+p + +r +lg+f+t+e A++a+ rk++ Rsa1.0_00666.1_g00002.1 115 KRVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTFDTEEAAYQAYQDKRKEY 162 568***9.******72....36********999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.19E-19	114	155	No hit	No description
SMART	SM00380	1.5E-13	115	175	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	17.28	115	172	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-6	116	127	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.48E-14	116	164	IPR016177	DNA-binding domain
Pfam	PF00847	1.0E-8	117	163	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	8.8E-18	118	157	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-6	138	154	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MVEIRKQQSL VDTKKQKRSN SLLSLSTHPQ DTHQPLRKVR IIVNDPYATD DSSSDEEDAT 60 KNPRQVKRIV REVNFPPLEP RVEPPPSVSS SQDSTKTTSK KVVSVSVPAA LRLKKRVGVR 120 QRKWGKWAAE IRHPITKTRT WLGTFDTEEA AYQAYQDKRK EYDALVGITN DDSVSETSQC 180 SRSSPLEQDT SASVLTSVKP NEEEIKIATS NNVDSSSKEV LFDFNFADLP IPDFGFFEEP 240 MAAGVNEHDL DFDCFFTDDQ LVDDFGLLDD INGFGDNGPN ALPDFDFADL GLDLAGSGFL 300 GDQNGPPHIT CTMKSFAT

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00217	DAP	Transfer from AT1G68550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00666.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189308	0.0	AC189308.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034A02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445542.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF118-like
Refseq	XP_018445543.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF118-like
Swissprot	Q9CA27	1e-104	EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBL	A0A3N6RCH1	0.0	A0A3N6RCH1_BRACR; Uncharacterized protein
STRING	Bo6g096060.1	1e-177	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2537	26	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.2	3e-78	ERF family protein

Publications ? help Back to Top
Tran MK,Schultz CJ,Baumann U Conserved upstream open reading frames in higher plants. BMC Genomics, 2008. 9: p. 361 [PMID:18667093]