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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00647.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 167aa MW: 19170.3 Da PI: 9.4796 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32 | 2.2e-10 | 50 | 143 | 5 | 80 |
-..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHH CS B3 5 ltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvk 70 lt+ dv k + l++p + + +h +g+ke++ t+ + d++ ++We+kl+ +k+ + y+l+ W++ vk Rsa1.0_00647.1_g00008.1 50 LTTTDVDKGqSHLSIPMSSLLTHsfmtsdekekienrvKGDKEGGLTVEVIDPKLKVWELKLRSnmKKT--SslYLLAYQWNHVVK 133 5666666654559999999999999999999999999988999*******************8844444..446************ PP HHT--TT-EE CS B3 71 angLkegDfv 80 n+ k+gD + Rsa1.0_00647.1_g00008.1 134 HNDFKQGDEL 143 *******965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 7.7E-23 | 36 | 133 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 2.0E-13 | 40 | 159 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-13 | 42 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.98 | 66 | 162 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MANGDVGMEE LMPFKKRRSL RVVVELPVNV KEKIVEMGGT QETLITKRTL TTTDVDKGQS 60 HLSIPMSSLL THSFMTSDEK EKIENRVKGD KEGGLTVEVI DPKLKVWELK LRSNMKKTSS 120 LYLLAYQWNH VVKHNDFKQG DELQLWSFRS QQKLCLALVL LQGEERL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00647.1_g00008.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018479981.1 | 1e-119 | PREDICTED: B3 domain-containing protein At3g25182-like | ||||
TrEMBL | A0A3P6CK52 | 3e-99 | A0A3P6CK52_BRACM; Uncharacterized protein | ||||
STRING | XP_006411545.1 | 4e-55 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2001 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 9e-12 | B3 family protein |