PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00642.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRF
Protein Properties Length: 363aa    MW: 41147.9 Da    PI: 8.0148
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00642.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.45.9e-2480123144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+epgrCrRtDGKkWRCsr++++++k+CE+H+hrg++r +k+ +
  Rsa1.0_00642.1_g00025.1  80 DPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGKNRAKKTLD 123
                              79**************************************9876 PP
2QLQ64.33e-221550237
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                             +FT++Q+q+L++Q+l+yKy+++++PvPpeL++ i++
  Rsa1.0_00642.1_g00025.1 15 PFTPTQWQELEHQALIYKYMVSGVPVPPELIFSIRR 50
                             9*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.9E-141450IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-161549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.9271550IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.41580124IPR014977WRC domain
PfamPF088797.3E-2081121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNQSGTNGRT TYRPPFTPTQ WQELEHQALI YKYMVSGVPV PPELIFSIRR SLDSSLVSRL  60
IPHQSIGWGS YQMGFGTKTD PEPGRCRRTD GKKWRCSREA YPDSKYCEKH MHRGKNRAKK  120
TLDQNQTTAP LTSPSLSFPN KDSPISPTLS SSSSFPFIDL YSRFGVGSSN SYPYPSSPKQ  180
QQTLQHASAL SLHQNTSTSH FNVLASETDH KDFRNFQGIG ERTFFPEASK SFQESPYHHQ  240
QALATAMNDS YHGSSSDHHH HTYSSSSSSS QHQDHRQQQP QQQQCFVLGA DMFNKPTRTV  300
LTNTSRQSDQ NQEEEEKDSS ETKKSIHHFF GEDWAQNKNS SDSWLDLSSQ SRLDTGNLQS  360
DPC
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Acts together with GIF1 for the development of appropriate leaf size and shape through the promotion and/or maintenance of cell proliferation activity in leaf primordia. {ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:15960617}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00642.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1803010.0JN180301.1 Brassica rapa subsp. pekinensis growth-regulating factor 5 (GRF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490328.10.0PREDICTED: growth-regulating factor 5-like
SwissprotQ8L8A61e-153GRF5_ARATH; Growth-regulating factor 5
TrEMBLA0A398A1D20.0A0A398A1D2_BRACM; Uncharacterized protein
STRINGBo3g065850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45672651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-121growth-regulating factor 5