PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00642.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 114aa    MW: 12747.8 Da    PI: 8.8983
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00642.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.5e-4051041100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C+kdC+++pyfp ++p kfa++h+++Ga nv+k+l++lp ++r +a++sl +eA++r++dPvyG+vg+i+ lq q
  Rsa1.0_00642.1_g00021.1   5 RCAACKYLRRRCPKDCIFSPYFPPSDPDKFACIHRIYGAGNVSKMLQQLPVQTRAEAVESLSFEAKCRVDDPVYGCVGIISLLQTQ 90 
                              6************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++++a la++++e
  Rsa1.0_00642.1_g00021.1  91 IQNTQALLAKTQAE 104
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.6974105IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-395102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MNPKRCAACK YLRRRCPKDC IFSPYFPPSD PDKFACIHRI YGAGNVSKML QQLPVQTRAE  60
AVESLSFEAK CRVDDPVYGC VGIISLLQTQ IQNTQALLAK TQAEIAVAQN KQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37610512111LOB family transfactor Ramosa2.1
5ly0_B1e-37610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00642.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738471e-104AB473847.1 Arabidopsis thaliana ASL14 mRNA for ASYMMETRIC LEAVES2-like 14 protein, complete cds.
GenBankDQ0566091e-104DQ056609.1 Arabidopsis thaliana putative LOB domain protein (At3g26620) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490391.12e-80PREDICTED: LOB domain-containing protein 24
SwissprotP594671e-70LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594681e-70LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A398A7B91e-75A0A398A7B9_BRACM; Uncharacterized protein
STRINGBo3g065910.15e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.15e-73LOB domain-containing protein 23