PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00625.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 372aa MW: 41889.6 Da PI: 7.2402 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4e-32 | 192 | 246 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Rsa1.0_00625.1_g00013.1 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 246 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.48E-17 | 191 | 246 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 191 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-23 | 192 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 196 | 245 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.1E-20 | 276 | 323 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDNINFESSN ASQGSRLHLQ PQPPQPFNLQ DVNMNHYNQS SPWTSETFSG YTPYDCTSNQ 60 SFSVQCSSSK PYHALFPPYH HLSSDHPSVD QSQSMVPVQL LQNQYSKPFY QKSCANDFAA 120 TNTSSSSYSL SFDASQDPQE LCRRTYSTSN VTQLDFSSSH HQAKQTHPRL SSPSFSTHGG 180 SMAPNCGTVG NKTRIRWTQD LHEKFVECVN RLGGADKATP KAILKLMDSE GLTIFHVKSH 240 LQKYRIAKYI PDYQEGKFEK GSCSKELSQL DTKTGVQIKE ALQLQLDVQR HLHEQLEIQR 300 NLQLRIEEQG KQLKIMIEQQ QKTKECLLKS PNAEASLSLS ASDHSPPPFS IQDAEALMLT 360 TYGDTQFQSK IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-23 | 192 | 249 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00625.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468228.1 | 0.0 | PREDICTED: myb family transcription factor PHL5-like | ||||
Swissprot | Q0WVU3 | 0.0 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A3P6AKJ9 | 0.0 | A0A3P6AKJ9_BRACM; Uncharacterized protein | ||||
STRING | Bra028717.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 0.0 | G2-like family protein |