PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00624.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 434aa    MW: 49607 Da    PI: 5.7764
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00624.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.45.8e-22236293155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                              kpr+ Wt+ L e+F+ea++  GG++kA Pk +l++   m++kgLt+++v SHLQkYRl
  Rsa1.0_00624.1_g00003.1 236 KPRMLWTSYLQEKFLEAINIVGGPKKASPKVLLKCledMNIKGLTRNNVSSHLQKYRL 293
                              79****************************887654449******************8 PP
2Response_reg57.39.2e-20211261106
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vd + + + ++++++e+  y +v++ +d+eea++ l +++  +++++ D  mpg++Gl++l+ i ++  +lp++++++ ++ e
  Rsa1.0_00624.1_g00003.1  21 VLVVDASLSTLLNMKEIMERCSY-QVTAYADAEEAIAFLTNSKheINIVIWDYHMPGINGLQALTIIGSKM-DLPVVIMSDDDKTE 104
                              899********************.***************776667**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHH CS
             Response_reg  85 dalealkaGakdflsKpfdpee 106
                               + +a+  Ga  +++Kp+ +e 
  Rsa1.0_00624.1_g00003.1 105 SVMDAMVHGACHYVMKPVRKEI 126
                              *****************87664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.68E-2718142IPR011006CheY-like superfamily
SMARTSM004482.2E-1519130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.2E-3019177No hitNo description
PROSITE profilePS5011034.92720135IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-1621128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-1522130No hitNo description
SuperFamilySSF466891.09E-11234296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-20235297IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-18236293IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSIGNITDDG DKTLFQPSTN VLVVDASLST LLNMKEIMER CSYQVTAYAD AEEAIAFLTN  60
SKHEINIVIW DYHMPGINGL QALTIIGSKM DLPVVIMSDD DKTESVMDAM VHGACHYVMK  120
PVRKEIIATM WQHIVRKRMI SKPGLVPPVV SHDDCSKQEK DDSVTVDQDD SEQNIDKIEE  180
KATKKRRRTC IGENQPMQSD LVKSNGSDQE SDDSRSISNY NCEQSINKEE TRYFKKPRML  240
WTSYLQEKFL EAINIVGGPK KASPKVLLKC LEDMNIKGLT RNNVSSHLQK YRLSLEQNQI  300
PQQLPETDWS SLCRHLPSVG MNNGFIVPSS LMNGPAVYPV QENQYQNGYL AMNNNHFVTN  360
NIPGVPYFNN EHHFQQQHQQ RQYRLPNQVN YMLRRNEPQK AYNGIGLTDL ESSIYTSLPN  420
DPNEFLFDDY NFIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00624.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459857.10.0PREDICTED: putative two-component response regulator ARR19
TrEMBLA0A3P6F8J40.0A0A3P6F8J4_BRAOL; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.18e-66response regulator 19