PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 186aa MW: 20622.8 Da PI: 7.7284

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00621.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59	1.2e-18	21	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+e Aa+a++ a +l+g Rsa1.0_00621.1_g00002.1 21 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVFYLRG 70 69***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.813	21	78	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-21	21	79	IPR016177	DNA-binding domain
SMART	SM00380	9.1E-39	21	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-9	22	33	IPR001471	AP2/ERF domain
CDD	cd00018	1.11E-26	22	80	No hit	No description
Pfam	PF00847	3.7E-12	22	70	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-30	22	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-9	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MEVAAAVPTS AVATARKREK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS YSTPEAAARA 60 YDTAVFYLRG PSARLNFPEL LAGVKVAGGN GGGDMSAAYI RRKAAEVGAQ VDALEAAGGN 120 RHHHHQQYQR GDHDYVDDDH SVNHSDYRLN DGQHECSSKE GFKRCNASWE AVDLNKLPDP 180 ETSDDD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-15	20	78	4	63	ATERF1
3gcc_A	2e-15	20	78	4	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00020	PBM	Transfer from AT4G36900	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00621.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232512	0.0	AC232512.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065B14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480385.1	1e-137	PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-10
Swissprot	Q9SW63	1e-87	RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBL	A0A0D3DI45	1e-124	A0A0D3DI45_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F6I7	1e-124	A0A3P6F6I7_BRAOL; Uncharacterized protein
STRING	Bo7g118430.1	1e-124	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36900.1	3e-86	related to AP2 10

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507]