PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00616.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 418aa    MW: 45727.8 Da    PI: 6.6611
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00616.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.7e-114469126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             ++++ C++f+rtG C yG++C+++H+
  Rsa1.0_00616.1_g00003.1 44 PGERDCHYFLRTGKCGYGSSCRYNHP 69
                             5789*********************9 PP
2zf-CCCH36.48.5e-1290114327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C +f++tG CkyG+ Ck++H++
  Rsa1.0_00616.1_g00003.1  90 QPDCEYFLKTGACKYGSACKYHHPK 114
                              789********************96 PP
3zf-CCCH30.75.5e-10135159327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              ++ C+++++ G C++G  CkF+H++
  Rsa1.0_00616.1_g00003.1 135 EKSCPYYMQKGMCRFGVACKFHHPQ 159
                              567********************97 PP
4zf-CCCH40.54.5e-13239263327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+ff+++GtCkyGd+Ck++H++
  Rsa1.0_00616.1_g00003.1 239 RAECSFFMKNGTCKYGDNCKYSHPK 263
                              799********************96 PP
5zf-CCCH35.12.3e-11280305126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ++++ C +f ++G+CkyG++CkF H+
  Rsa1.0_00616.1_g00003.1 280 PGQPACGNFKAYGFCKYGASCKFDHP 305
                              57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.5E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5874371IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-84569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-64771IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-44969IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.95387115IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-692115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-493113IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835132160IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-7134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6134161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4137159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408236264IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8237263IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10239263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7239265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-6242264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5277305IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-6279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145279307IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4285304IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MSETQQVQNS TESIPSSDKT EDTLTKVKVN EENKDEPSLY PDRPGERDCH YFLRTGKCGY  60
GSSCRYNHPV SHVPEAVFYH REDLPERIGQ PDCEYFLKTG ACKYGSACKY HHPKDRNGAG  120
PVLFNALGYP IRKGEKSCPY YMQKGMCRFG VACKFHHPQT QTHNVQPTSF PSVGIPYAGG  180
LPLISLPPAT YEAMARPHAP HPQAYLSLMV APPQGWSTYM GGSNSIYDVK IKIDSSSERA  240
ECSFFMKNGT CKYGDNCKYS HPKERMLPNL FNPLVLPARP GQPACGNFKA YGFCKYGASC  300
KFDHPVPVNP GLTMPSLPTA YAPPVSTQVR ITPPPGRSDS TTVSNGDEPA AENKSSETEK  360
QDHGPDKSEV QDSSQLSHSD SAALSNEAEN PSPEAKKEDD DPSPADTSGK QGSSDNDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00616.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478283.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A397ZR980.0A0A397ZR98_BRACM; Uncharacterized protein
TrEMBLM4DZ700.0M4DZ70_BRARP; Uncharacterized protein
STRINGBra021817.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.10.0zinc finger nuclease 2