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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00612.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 141aa MW: 15812 Da PI: 9.2247 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00043 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ Rsa1.0_00612.1_g00011.1 69 FSCGKCGKALAVKGDWRTHEKNC 91 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.42E-6 | 54 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 55 | 89 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MHMWGHGSEF RKGGDSLKGT TQPAAILRLP CYCCAEGCKN NINHPRAKPL KDFRTLQTHY 60 KRKHGSKPFS CGKCGKALAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKSFGDGH 120 SPHPSLSFGG FEEDTECVTT E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00612.1_g00011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438239.1 | 1e-102 | PREDICTED: zinc finger protein WIP3 | ||||
Swissprot | Q9SGD1 | 5e-99 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A0D3C8H0 | 1e-100 | A0A0D3C8H0_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EC83 | 1e-100 | A0A3P6EC83_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g008880.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-101 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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