PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00609.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 271aa    MW: 31106.2 Da    PI: 4.8932
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00609.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2059112356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k++++t++q++ Le+ Fe ++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  Rsa1.0_00609.1_g00006.1  59 KKRRLTTQQVHLLEKSFETENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 112
                              56689************************************************9 PP
2HD-ZIP_I/II128.72.4e-4159150293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkrrl+++qv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ ++++ L
  Rsa1.0_00609.1_g00006.1  59 KKRRLTTQQVHLLEKSFETENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDFSLLKSSYDQLLSNYDSILNDNHLL 144
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              r+++++
  Rsa1.0_00609.1_g00006.1 145 RSQVTS 150
                              *99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-2045116IPR009057Homeodomain-like
PROSITE profilePS5007117.96154114IPR001356Homeobox domain
SMARTSM003895.0E-1957118IPR001356Homeobox domain
CDDcd000868.21E-1859115No hitNo description
PfamPF000461.4E-1759112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2161120IPR009057Homeodomain-like
PRINTSPR000311.4E-68594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000311.4E-694110IPR000047Helix-turn-helix motif
PfamPF021837.2E-15114156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESNSFFFDP SAAHGNMFFF QGARSMMNME ESSKRRPFFC SHEDLYDDDD YNDDHTPDKK  60
RRLTTQQVHL LEKSFETENK LEPERKTELA KKLGLQPRQV AVWFQNRRAR WKTKQLERDF  120
SLLKSSYDQL LSNYDSILND NHLLRSQVTS LAEKLQAKEE ATKEPSGQVP EANPQQQLDS  180
VNMNHIEPPP IKTEDRLSSG STVLDEEDAP QLLDSCDSYF PSIVPIHQLE EHNNNGSDND  240
RSCFVVDVFG ATTSPPHGHG HGESLGFWGW S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00609.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439172.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-124HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D3AG701e-158A0A0D3AG70_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMT91e-158A0A3P6FMT9_BRAOL; Uncharacterized protein
STRINGBo1g158930.11e-158(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-127homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]