PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ERF

Protein Properties

Length: 282aa MW: 32363.7 Da PI: 5.0452

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00593.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.9	5.2e-18	133	183	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + l+g+ Rsa1.0_00593.1_g00021.1 133 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFILRGH 183 59**999.******954...4******************99999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.78E-33	132	192	No hit	No description
SMART	SM00380	5.5E-35	133	196	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.064	133	190	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-31	133	192	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-22	133	191	IPR016177	DNA-binding domain
PRINTS	PR00367	2.5E-11	134	145	IPR001471	AP2/ERF domain
Pfam	PF00847	1.4E-12	134	182	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-11	156	172	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDFDEELNLC ITKGKNIDPS FEEASSTTSS RSIKKMRDTD HRPKPYFPFS SFSSSDLSVG 60 FPFTLDPTIR HQQQQHFGYV QQRDQTMQGQ NQMISFSPQQ PEQQYMTKYW SDTFNQSPRM 120 NQESVQPYSA TKLYRGVRQR QWGKWVAEIR KPRSRARLWL GTFDTAEEAA MAYDRQAFIL 180 RGHNATLNFP EHYANREVEL HDSTGSLDQK QPEVPQLNEV NLEGKDEAVS DCGVEDGMAE 240 AWLNAVTSGW GPESPLWDDL DSSHFPQCSS SSSASCPMRP YF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	132	190	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-20	132	190	4	63	ATERF1
3gcc_A	1e-20	132	190	4	63	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	43	KKMRDTDHRPK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00458	DAP	Transfer from AT4G28140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00593.1_g00021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189441	1e-170	AC189441.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069M23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018481042.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF054-like
Swissprot	Q9M0J3	1e-129	ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBL	A0A0D3DGJ2	1e-159	A0A0D3DGJ2_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F4Q3	1e-159	A0A3P6F4Q3_BRAOL; Uncharacterized protein
STRING	Bo7g111910.1	1e-160	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2141	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28140.1	1e-117	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]