PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00582.1_g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 228aa    MW: 26296.9 Da    PI: 10.0147
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00582.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32149207159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK vk+++fprsYY+Ct +gC+vkk+v+r + d+ vv++tY+g H+h+
  Rsa1.0_00582.1_g00018.1 149 LDDGYRWRKYGQKAVKNNPFPRSYYKCTEKGCRVKKQVQRLSGDEGVVVTTYQGVHTHP 207
                              59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-33134207IPR003657WRKY domain
SuperFamilySSF1182908.89E-29141208IPR003657WRKY domain
PROSITE profilePS5081130.871144209IPR003657WRKY domain
SMARTSM007741.4E-37149208IPR003657WRKY domain
PfamPF031065.7E-26150207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006817Biological Processphosphate ion transport
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSQTVREMMK PDAHDTDTKP KANFSESELS FLLKLIPELI QHQTLVASTI PSLKHIPAKL  60
SGIKETKVNM KTAYIEVTRR GEQEMEDRSC QVLFPSSSVD HRLSGDQTQI KTSSSLQQHN  120
TNEEKKHKSK KKEREARFAF QTRSQVDILD DGYRWRKYGQ KAVKNNPFPR SYYKCTEKGC  180
RVKKQVQRLS GDEGVVVTTY QGVHTHPVDK PSDNFHHILT QMHIFPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-28139206774Probable WRKY transcription factor 4
2lex_A6e-28139206774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00325DAPTransfer from AT3G01970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00582.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121690.0FJ012169.1 Brassica napus WRKY45 transcription factor (WRKY45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486951.11e-106PREDICTED: probable WRKY transcription factor 45
SwissprotQ9S7634e-69WRK45_ARATH; Probable WRKY transcription factor 45
TrEMBLA0A0D3CNB13e-92A0A0D3CNB1_BRAOL; Uncharacterized protein
TrEMBLA0A397ZGD63e-92A0A397ZGD6_BRACM; Uncharacterized protein
TrEMBLM4FHH93e-92M4FHH9_BRARP; Uncharacterized protein
TrEMBLV9LYL23e-92V9LYL2_BRANA; WRKY transcription factor 45.1
STRINGBra040557.1-P6e-93(Brassica rapa)
STRINGBo5g153870.16e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01970.12e-70WRKY DNA-binding protein 45
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]