PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00571.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 171aa    MW: 18762.8 Da    PI: 5.6759
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00571.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-122771549
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49
                             ++ +r+ +NRe+ArrsR RK++ i+ L+  + +L++ N++    l
  Rsa1.0_00571.1_g00021.1 27 RKRKRMLSNRESARRSRMRKQKHIDDLTAQINQLSSDNRQILTSL 71
                             57899*********************************8765444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-152387IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.1282571IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-122777No hitNo description
PfamPF001701.3E-92771IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.8E-102799No hitNo description
CDDcd147021.21E-202879No hitNo description
PROSITE patternPS0003603045IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MASSISTYRS SSSSDGGNPN AVAVDERKRK RMLSNRESAR RSRMRKQKHI DDLTAQINQL  60
SSDNRQILTS LTVTSQLHMK IQAENSILTA QMAELSSRLE SLNEIVDLVT TTNGGGFGGG  120
VDLIDGCGFD DRTVGISSDG YYDDMINGVN HWGGSVYYSN QPIMANDINM Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12647RKRKRMLSNRESARRSRMRKQK
23946RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to specific DNA sequences in target gene promoters. BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000250|UniProtKB:O65683, ECO:0000269|PubMed:29348240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00571.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534851e-136AK353485.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-45-P17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492251.11e-123PREDICTED: bZIP transcription factor 2-like
SwissprotQ9SI155e-85BZIP2_ARATH; bZIP transcription factor 2
TrEMBLA0A3P5YJ841e-105A0A3P5YJ84_BRACM; Uncharacterized protein
STRINGBo3g093980.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.12e-75basic leucine-zipper 2
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]