PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00568.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 282aa    MW: 32309.4 Da    PI: 8.9859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00568.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1658103147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg W   Ed +lv++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ 
  Rsa1.0_00568.1_g00012.1  58 RGHWKISEDSQLVELVAVYGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 103
                              799*****************************.***********996 PP
2Myb_DNA-binding47.25e-15111154247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +++ eE+e+l+ a++ +G++ W+ Ia+ +  gRt++ +k++w+ +
  Rsa1.0_00568.1_g00012.1 111 RAFSVEEEERLLAAHRAFGNK-WAMIAKIFD-GRTDNALKNHWHVL 154
                              689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.68953104IPR017930Myb domain
SMARTSM007172.1E-1257106IPR001005SANT/Myb domain
SuperFamilySSF466892.1E-2758151IPR009057Homeodomain-like
PfamPF002491.3E-1558103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2459111IPR009057Homeodomain-like
CDDcd001673.50E-1161102No hitNo description
PROSITE profilePS5129425.167105159IPR017930Myb domain
SMARTSM007171.9E-12109157IPR001005SANT/Myb domain
PfamPF002492.6E-11111154IPR001005SANT/Myb domain
CDDcd001679.93E-9112155No hitNo description
Gene3DG3DSA:1.10.10.604.3E-19112159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDISCFQKYP FDLPCSRAFN GDGEYNAVEF SNKRRMVKVS DESKNKKKKQ RGSRVCSRGH  60
WKISEDSQLV ELVAVYGPQN WNHIAEKMQG RTGKSCRLRW FNQLDPRINK RAFSVEEEER  120
LLAAHRAFGN KWAMIAKIFD GRTDNALKNH WHVLMARKLR QQSTSYMRRF NGSAHKPNAD  180
HKSFNHSPGS VDDEDMNLED NSWKMLNEET TNLKEEYCSS RMPMQAPHHY YSALSADSLA  240
LTLHVSIQEP SSSLSSLSLP PSSAEPPAFI DFLGVCHQSP NI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-30581594105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-295715926128MYB TRANSFORMING PROTEIN
1mse_C5e-30581594105C-Myb DNA-Binding Domain
1msf_C5e-30581594105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13248KRRMVKVSDESKNKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00568.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452450.10.0PREDICTED: trichome differentiation protein GL1-like
TrEMBLA0A0D3E0M01e-163A0A0D3E0M0_BRAOL; Uncharacterized protein
STRINGBo9g008750.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-128myb domain protein 110