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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Rsa1.0_00568.1_g00009.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
| Family |
NAC |
| Protein Properties |
Length: 326aa MW: 37046.1 Da PI: 7.2828 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Rsa1.0_00568.1_g00009.1 | genome | RGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 181.3 | 2.5e-56 | 20 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrFhPtdeel+++yLk+kv ++ +++ +i evd++kvePwdLp k+k +ekewyfF+ rd+ky+tg r+nratk+gyWkat
Rsa1.0_00568.1_g00009.1 20 LPPGFRFHPTDEELISYYLKPKVLNSLFSA-VAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKAT 104
79*************************999.67***************98999********************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
gkdke+++ +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
Rsa1.0_00568.1_g00009.1 105 GKDKEIFR-EKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 146
********.999*****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009611 | Biological Process | response to wounding |
| GO:0042542 | Biological Process | response to hydrogen peroxide |
| GO:0051091 | Biological Process | positive regulation of sequence-specific DNA binding transcription factor activity |
| GO:1900057 | Biological Process | positive regulation of leaf senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MDCEVSRTRE IVEDSELIDL PPGFRFHPTD EELISYYLKP KVLNSLFSAV AIGEVDLNKV 60
EPWDLPWKAK IGEKEWYFFC VRDRKYPTGL RTNRATKAGY WKATGKDKEI FREKSLVGMK 120
KTLVFYKGRA PKGVKTNWVM HEYRLEGEYA IDNLPKTAKN EWVISRVFQK QGDGKKMHIS 180
SLRMLGSGIN QFKPVGLPPL MDSSTYLKSR GDTSAGSLSH VTCFSDQTTE DKSHFSESKD 240
ESNFTMIGSS STHLIPNIGS MFHHNPVFMQ DNTSILKMLL DSEETQFKKN LQDLGTSDNE 300
LIASSWNGHD ISGSTAPVEV ACFWNF
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-53 | 18 | 176 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 2e-53 | 18 | 176 | 15 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 2e-53 | 18 | 176 | 15 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KF738272 | 0.0 | KF738272.1 Brassica napus NAC transcription factor 59 (NAC59.1) mRNA, complete cds. |
