PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00566.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 23162.3 Da PI: 4.5182 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++slvyeAear+rdPvyG++g i +lq+q Rsa1.0_00566.1_g00002.1 32 PCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVFGASNIVKLLQELPESQRTDAVKSLVYEAEARIRDPVYGSAGAIYNLQRQ 117 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+aela+++ e Rsa1.0_00566.1_g00002.1 118 VSELQAELAKAQVE 131 *********99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.445 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.0E-42 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MLDMESKGDA SAAIIYASPA SSPPPTRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK 60 FSIAHRVFGA SNIVKLLQEL PESQRTDAVK SLVYEAEARI RDPVYGSAGA IYNLQRQVSE 120 LQAELAKAQV EIVSMQFQRS NLLELIQNMD QRNQEQQNMM AFESSLGNCE HDEFISSSDE 180 ESNDFGFLED KYFNTNSLML WCDPLLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-43 | 24 | 133 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-43 | 24 | 133 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00566.1_g00002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489520.1 | 1e-153 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 5e-94 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A3N6REW4 | 1e-146 | A0A3N6REW4_BRACR; Uncharacterized protein | ||||
STRING | Bo8g112780.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-94 | LOB domain-containing protein 1 |