PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00552.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30892 Da    PI: 10.1884
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00552.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ienk+ rq+tfskRrng++KKA+ELSvLCda+va i+fs++gklye+ss
  Rsa1.0_00552.1_g00002.1  9 KKIENKTSRQITFSKRRNGLFKKAHELSVLCDAQVAAIVFSQSGKLYEFSS 59
                             68***********************************************96 PP
2K-box57.27.3e-201392201697
                    K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                              +l++e++ + k+i+ L+  q +l+G++L+s+sl eLq +e+q+eksl+ iRs+K +l+ +q+ +l+ ke+el +e ++Lr++
  Rsa1.0_00552.1_g00002.1 139 ELKKEMDIMVKKIDLLEVHQMKLMGKGLGSCSLAELQDIETQIEKSLRIIRSRKADLYADQLLKLKDKERELLDERRRLREE 220
                              6899***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.113161IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-30323IPR002100Transcription factor, MADS-box
CDDcd002659.41E-38361No hitNo description
SuperFamilySSF554552.22E-29363IPR002100Transcription factor, MADS-box
PfamPF003192.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.379137228IPR002487Transcription factor, K-box
PfamPF014861.6E-18139220IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVRGKIEIKK IENKTSRQIT FSKRRNGLFK KAHELSVLCD AQVAAIVFSQ SGKLYEFSSS  60
DHILNYSPKG IQRPNGRDVK SVVAKTRTRV ADSTAVPLLP PSYERLVPTL MEKTIERYRK  120
FSNDYFAPGR PQVELYMLEL KKEMDIMVKK IDLLEVHQMK LMGKGLGSCS LAELQDIETQ  180
IEKSLRIIRS RKADLYADQL LKLKDKEREL LDERRRLREE EIRETLVRPM LPVTLHTEKN  240
ETVGACRTSK RSSEVETDLF IGLPATRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16161161MEF2 CHIMERA
6byy_B3e-16161161MEF2 CHIMERA
6byy_C3e-16161161MEF2 CHIMERA
6byy_D3e-16161161MEF2 CHIMERA
6bz1_A3e-16161161MEF2 CHIMERA
6bz1_B3e-16161161MEF2 CHIMERA
6bz1_C3e-16161161MEF2 CHIMERA
6bz1_D3e-16161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00552.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324394e-82AC232439.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475523.11e-132PREDICTED: MADS-box protein AGL71-like isoform X1
RefseqXP_018475524.11e-132PREDICTED: MADS-box protein AGL71-like isoform X2
SwissprotQ9LT936e-93AGL71_ARATH; MADS-box protein AGL71
TrEMBLA0A397ZUY71e-120A0A397ZUY7_BRACM; Uncharacterized protein
TrEMBLM4EK371e-120M4EK37_BRARP; Uncharacterized protein
STRINGBra029154.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.34e-85AGAMOUS-like 71