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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00548.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ARF | ||||||||
Protein Properties | Length: 820aa MW: 90556.5 Da PI: 6.3993 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.8 | 4.2e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ +++++ + +l +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v Rsa1.0_00548.1_g00007.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySLQPPAQ-ELLARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSV 211 99***********************9*****97777664.9********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+++++r+ Rsa1.0_00548.1_g00007.1 212 IFI--RNEKNQLFLGIRRA 228 ***..5688889***9997 PP | |||||||
2 | Auxin_resp | 110.7 | 1.5e-36 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +t+s F+v+++Pras+seFv++++k+ ka+ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Rsa1.0_00548.1_g00007.1 253 AAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336 799******************************986599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-47 | 113 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.2E-40 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-20 | 126 | 222 | No hit | No description |
PROSITE profile | PS50863 | 12.28 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.3E-32 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.49E-7 | 708 | 788 | No hit | No description |
PROSITE profile | PS51745 | 23.082 | 714 | 798 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MKLSTSGLVQ QGSHEGEKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE 60 VDGHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPEEQKET FVPIELGIPS 120 KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSL QPPAQELLAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIRNEKNQ LFLGIRRATR PQTIVPSSVL 240 SSDSMHIGLL AAAAHASATN SCFTVFFHPR ASQSEFVIQL SKYIKAVFHT RISVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWHAG TSSLHDGRGE LGSGLPWLRG GGGEQQGLLP LNYPSVGLFP 420 WMQQRLDLAQ LGTDNNQQYQ AMLAAGLQNM GGGDPLRQQF VQLQEPHHQY LQQSASHNSD 480 LMLQQQQQQQ QQASHHLMHA QTQIMSENLP LRQEVSKQPA GGQQSVDQNA YLNAFKMQNG 540 QLQQQWQQHS DMPSPSFTDA SNKYGTTASP MQQNSASPGS AGQHGSNLLN FSITGQSVLP 600 EQLMGEGWSP KASNTFSEPL SLPQAYAGGK SLALEPSSAN VNPSVFGVDP GSSGLFLPST 660 VPRFASSSGG DAEAYPISLA DSGFENSLYN SCMQDTTHEL LHGVGQINSS NQTKNFVKVY 720 KSGSVGRSLD ISRFSSYHEL REELGKMFAI EGLLEDPLRS GWQLVFVDKE NDILLLGDDP 780 WESFVSNVWY IKILSPEDVQ EMGDHGEGSG GSLPQNPTHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-154 | 8 | 357 | 39 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00548.1_g00007.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF042196 | 0.0 | AF042196.1 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018483964.1 | 0.0 | PREDICTED: auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A397ZJ87 | 0.0 | A0A397ZJ87_BRACM; Auxin response factor | ||||
STRING | Bra028110.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1344 | 28 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |