PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00524.1_g00024.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 340aa MW: 36940.2 Da PI: 7.643

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00524.1_g00024.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.6e-12	96	141	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W +eE+ ++ + ++lG+g+W+ I+r k+Rt+ q+ s+ qky Rsa1.0_00524.1_g00024.1 96 NPWREEEHRMFLLGLQKLGKGDWRGISRNYVKTRTPTQVASHAQKY 141 68*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.878	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	16.086	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	4.68E-15	92	145	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-16	93	144	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-9	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-10	96	140	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-9	96	141	IPR001005	SANT/Myb domain
CDD	cd00167	1.99E-8	97	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MTRRCSHCNQ NGHNSRTCPN RGVKLFGVRL TEGSIRKCAS MGNLSHHSSG SGLSGLVSNN 60 PASPGDGPDH GVGDGYASED FVPGSSSSSR ERKRGNPWRE EEHRMFLLGL QKLGKGDWRG 120 ISRNYVKTRT PTQVASHAQK YFIRLYNVSR RKRRSSLFDI VPPDEQVIDS QELQAEDVQM 180 QGSDSVPAPL ILETEECESI KSTNSSGDEP PTASFDTIQT QLQPPPPGSF PVLYPAYFSP 240 FYSFPFPVWP AAYVTGPPAN EETHEILRPT AVHSKAAPIN VDQLLGMSKL SLGEFSQNGV 300 LEQSLSLKLV GGSASRQSAF HPNPANGGGV PDMNTVIHAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00524.1_g00024.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC795995	1e-120	KC795995.1 Brassica nigra clone BAC BGH24O18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477686.1	0.0	PREDICTED: myb-like protein J isoform X1
Swissprot	Q9LVS0	1e-157	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A3P6A5X2	0.0	A0A3P6A5X2_BRACM; Uncharacterized protein
STRING	Bra012665.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3426	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-127	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]